Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 10,073,663 – 10,073,783 |
Length | 120 |
Max. P | 0.632846 |
Location | 10,073,663 – 10,073,783 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 73.72 |
Mean single sequence MFE | -39.30 |
Consensus MFE | -16.10 |
Energy contribution | -17.72 |
Covariance contribution | 1.62 |
Combinations/Pair | 1.44 |
Mean z-score | -1.94 |
Structure conservation index | 0.41 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.632846 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10073663 120 + 23771897 GAUGGCAAAGGCUCCGGUGGAAAAGAUUCCGAAAAGGGUCGGUUUCUUACGGCCUGUGGUGUCCAUCAAAAGCACCGCAAAAAAGCAUCCGCCCCACCGGAGCAGCCCGAAAACCACAAA ...(((....((((((((((..((((..((((......))))..))))..(((.((((((((.........)))))))).....(....)))))))))))))).)))............. ( -47.10) >DroPse_CAF1 14926 120 + 1 GAGGGCGAAGGAUCCGCAGGAAAAGCAGCCAAACAACGUGGGCUUCUUGCGGCCUGUGGUGUCCACGAGGAGAAGCACGCAGAAGCAGCCACACCACCGCAUCACACCGAAUAUCACAUA ((..(((.(((..((((((((..(((..(((.......)))))))))))))))))(((((((((....)))...((..((....)).))..))))))))).))................. ( -36.40) >DroGri_CAF1 14048 120 + 1 AAUGGCAAAGACGCCGCCAGCAAAAGUGCCAAAUAGAGUGGGCUUUUUGCGGCCGACAGUGUCCAUUAGGAAGACAACAGAGAUGCAGCCGCCCCAACGUAAUAUACCAAAUACAACAUA ...(((...(((((.(((.(((((((.(((..........))))))))))))).....))))).....((..(.((.......)))..)))))........................... ( -25.30) >DroEre_CAF1 12175 120 + 1 AAUGGCAAAGGCUCCGGUGGAAAAGAUUCCGAAAAGGGUGGGCUUCUUCCGGCCAGUGGUGUCCAUCAGCAGCACCGCAAGGAAGCAUCCGCACCACCGGAGCAGCCCGAAAACCACAAA ...(((....((((((((((........((.....))(((((...(((((.....(((((((.........)))))))..)))))..))))).)))))))))).)))............. ( -49.40) >DroYak_CAF1 14429 120 + 1 AAUGGCAAAGGCGCCGGUGGAAAAGAUGCCGAAGAGAGUGGGCUUUUUCCGGCCAGUGGUGUCCAUCAGCAGCACCGCAAAGAAGCAUCCGCACCAACGGAGCAGCCCGAAGACCACAAA ..((((......))))((((.......(((.(......).))).(((((.(((..(((((((.........)))))))......((.((((......)))))).))).)))))))))... ( -40.10) >DroAna_CAF1 12860 120 + 1 GAAGGCGAAAAUUCCCAACGAAAAUGUGCCGAAGAGAGUUGGGGACUUGCGACCUGUGGUGUCCAUUAGGGGCGCCACACAGAAACAGCCGCACCACCGCAGUACCCCAAACACCACAUA ...((((....(((.....)))....))))........(((((((((.(((...((((((((((.....))))))))))..(.......).......)))))).)))))).......... ( -37.50) >consensus AAUGGCAAAGGCUCCGGUGGAAAAGAUGCCGAAAAGAGUGGGCUUCUUGCGGCCUGUGGUGUCCAUCAGGAGCACCACAAAGAAGCAGCCGCACCACCGGAGCAGCCCGAAAACCACAAA ...((((.....((.....)).....))))........(((((...(((((....(((((((.........)))))))......((....)).....)))))..)))))........... (-16.10 = -17.72 + 1.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:02 2006