Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 10,073,016 – 10,073,136 |
Length | 120 |
Max. P | 0.897135 |
Location | 10,073,016 – 10,073,136 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.52 |
Mean single sequence MFE | -24.90 |
Consensus MFE | -16.81 |
Energy contribution | -16.60 |
Covariance contribution | -0.21 |
Combinations/Pair | 1.18 |
Mean z-score | -2.15 |
Structure conservation index | 0.68 |
SVM decision value | 1.00 |
SVM RNA-class probability | 0.897135 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10073016 120 + 23771897 GAAACUGUGGUCAUAGAUUCUGUCAGAUUUUUUUUGGGUCCAUUCGACUCAUGGAUAUUGUACUUCUACAUAUAUCCUCAUUUGUUUGUGAUCAAUACUAAACCACUCAACCAAUCAACA .......(((((((((((..((............((((((.....)))))).((((((((((....)))).)))))).))...))))))))))).......................... ( -24.50) >DroSec_CAF1 12230 104 + 1 GAAACUGUGGUCAUAGACCCUGUCCGAUUA--UUUGGGUUCAUUCGACUCAUGGAUAUUGUGCUUGUCUGUAU----UGAUCUUUUUAUGAUCAAUACUAAACUAA----C------UCA .......((((...((((...(..((((..--..((((((.....)))))).....))))..)..))))((((----(((((.......)))))))))...)))).----.------... ( -23.90) >DroSim_CAF1 12614 104 + 1 GAAACUGUGGUCAUAGACCCUGUCCGAUUA--UUUGGGUCCAUUCGACUCAUGGAUAUUGUUCUUGUCUGUAU----UGAUCUUUUUAUGAUCAAUACUAAACUAA----C------UCA ........((.((..(((..((((((....--..((((((.....))))))))))))..)))..)).))((((----(((((.......)))))))))........----.------... ( -26.30) >consensus GAAACUGUGGUCAUAGACCCUGUCCGAUUA__UUUGGGUCCAUUCGACUCAUGGAUAUUGUACUUGUCUGUAU____UGAUCUUUUUAUGAUCAAUACUAAACUAA____C______UCA .......((((((((((..................(((((.....)))))(((((((.......))))))).............)))))))))).......................... (-16.81 = -16.60 + -0.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:01 2006