| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,070,718 – 10,070,835 |
| Length | 117 |
| Max. P | 0.950892 |
| Location | 10,070,718 – 10,070,835 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 76.72 |
| Mean single sequence MFE | -37.84 |
| Consensus MFE | -16.91 |
| Energy contribution | -16.97 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.28 |
| Mean z-score | -2.59 |
| Structure conservation index | 0.45 |
| SVM decision value | 1.41 |
| SVM RNA-class probability | 0.950892 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10070718 117 + 23771897 CACAAUUGCUCCAAGGUGGCACUGGCCUUGCCCCUCAAAUAGGGAACCGAGAUCUCUCCGACCAACGCCAUAAAUGGGGCAAAUACCAGACCAUUGGCAAUACCAUCUAGGUAAC---AA .....((((((((..(((((..(((.(....((((.....))))....(((....))).).)))..)))))...)))))))).(((((((....(((.....)))))).))))..---.. ( -36.40) >DroVir_CAF1 15701 120 + 1 CACAUUUGCUCAAUGGACGUGGUAAUUGCGCCCCGCAUAUAAGAUACUGAAACCUCGCCGGCCAGUGCCAUAGUGGGAGCAAAUGCCAAUCCAUUGGCAAUGCCAUCUAGAUAGAGACUC .....((((.(((((((..(((((.((((..(((((............((....))...(((....)))...))))).)))).))))).))))))))))).................... ( -38.70) >DroSim_CAF1 10252 117 + 1 CACAAUUGCUCCAAGGUGGCACUGGCCAUGCCCCUCAUAUAGGGAACCGAGAUCUCUCCGACCAAGGCCAUAAAUGGGGCAAAUACCAGACCAUUGGCAAUACCAUCGAGGUAAC---AU .....((((((((..(((((..(((.(....((((.....))))....(((....))).).)))..)))))...)))))))).((((.((....(((.....)))))..))))..---.. ( -36.80) >DroEre_CAF1 9795 117 + 1 CACAGUUGCUCUAAGGACGCACUGGUCACGCCCCUCAUAUAGGGUACGGAAACCUCUCCGACUAAGGCCAUAAAUGGGGCAAAUACCAGACCAUUGGCAAUACCAUCUAGGUAAC---AA ....(((((.(((.((.....(((((...(((((........(((.((((......))))......)))......)))))....))))).....(((.....)))))))))))))---.. ( -32.24) >DroYak_CAF1 11230 117 + 1 CACAAUUGCUCCAAGGAGGCACUGGUCAGGCCCCUCAUAUAGGGCACCGAGAUCUCGCCGACCAGGGCCAUAAAUGGAGCAAAUACCAGGCCAUUGGCAAUACCAUCUAGGUAAC---AA .....((((((((....(((.((((((.(((((((.....))))....((....))))))))))).))).....)))))))).......(((...)))..((((.....))))..---.. ( -43.30) >DroAna_CAF1 9891 117 + 1 CUAAGCUGCUCCAUAUUGGUGGCGAGUUUUCCUCGCAUAUAGGGCACAGCCAGCUCUCCUGCCAGGGCCAAAAAUGGAGCAAAUACCAACCCGUUGGCGAUGCCAUCCAGGUAGC---UA ...(((((((((((.(((((.(((((.....)))))....(((((.......)))))((.....)))))))..)))))))........(((...((((...))))....))))))---). ( -39.60) >consensus CACAAUUGCUCCAAGGAGGCACUGGUCAUGCCCCUCAUAUAGGGAACCGAGAUCUCUCCGACCAAGGCCAUAAAUGGAGCAAAUACCAGACCAUUGGCAAUACCAUCUAGGUAAC___AA .....((((((((..(.(((...........(((.......)))....((....))..........))).)...))))))))...((((....))))...((((.....))))....... (-16.91 = -16.97 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:59 2006