Locus 343

Sequence ID 3L_DroMel_CAF1
Location 993,232 – 993,334
Length 102
Max. P 0.934851
window509

overview

Window 9

Location 993,232 – 993,334
Length 102
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 77.13
Mean single sequence MFE -28.02
Consensus MFE -19.06
Energy contribution -19.08
Covariance contribution 0.03
Combinations/Pair 1.08
Mean z-score -1.80
Structure conservation index 0.68
SVM decision value 1.24
SVM RNA-class probability 0.934851
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 993232 102 - 23771897
AUCCUAAAUGCGCCACCUGAUACUUAUCCCG---CGAACCCCCUCUUAUCCUCUU----AUCCUUUCCAGCUGGGCAACCAGGAGGCCACCUGGGUGGUAGCGGACUAC
............................(((---(..((((((......((((..----...((....))((((....))))))))......))).))).))))..... ( -28.30)
>DroSec_CAF1 11504 102 - 1
AUCCUAAAUGCACCACCCGAUACUUAUCUCU---CGACCCCCCUCUUAUCCUCUU----AUCCUUUCCAGCUGGGCAACCAGGAGGCCACCUGGGUGGUAGCGGACUAC
........(((((((((((((....)))...---.......((((.((......)----)..........((((....))))))))......))))))).)))...... ( -27.80)
>DroSim_CAF1 11676 101 - 1
AUCCUAAAUGCGCCACCCGAUACUUAUCUCU---CAACC-CCCUCUUAUCCUCUU----AUCCUUUCCAGCUGGGCAACCAGGAGGCCACCUGGGUGGUAGCGGACUAC
........(((((((((((((....)))...---.....-.((((.((......)----)..........((((....))))))))......))))))).)))...... ( -27.40)
>DroEre_CAF1 11076 84 - 1
----------CGCCACCCGAUACUUACACCU---CGACCU--------UCCGCUU----AUCCUUUCCAGCUGGGCAACCAGGAGGCCACCUGGGUGGUGGCGGACUAC
----------((((((((..........(((---((....--------..)....----...........((((....))))))))((....))).)))))))...... ( -27.80)
>DroYak_CAF1 12088 87 - 1
------------CCAACCGAUACUUAUGCCA---CGACCUC---CUUAUCCGCUU----AUCCUUUCCAGCUGGGCAACCAGGAGGCCACCUGGGUGGUGGCGGACUAC
------------..............(((((---(..((((---(......(((.----.........)))(((....)))))))).(((....)))))))))...... ( -27.80)
>DroPer_CAF1 26377 109 - 1
UUGCCACAAGCAACACUCGAUACUCAUCUCUUUUCUUUCCCUCUCUUUCGCUCUGUGCCUCUCUUUCCAGUUGGGCAACCAGGAGGCCACUUGGGUGGUGGCCGACUAC
..(((((...........(((....)))....................(((((.((((((((.........(((....)))))))).)))..))))))))))....... ( -29.00)
>consensus
AUCCUAAAUGCGCCACCCGAUACUUAUCCCU___CGACCCCCCUCUUAUCCUCUU____AUCCUUUCCAGCUGGGCAACCAGGAGGCCACCUGGGUGGUAGCGGACUAC
.................................................................(((..((((....))))(..(((((....)))))..)))).... (-19.06 = -19.08 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:39 2006