Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 10,068,445 – 10,068,542 |
Length | 97 |
Max. P | 0.647797 |
Location | 10,068,445 – 10,068,542 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 85.73 |
Mean single sequence MFE | -23.62 |
Consensus MFE | -16.24 |
Energy contribution | -17.12 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.10 |
Mean z-score | -1.89 |
Structure conservation index | 0.69 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.647797 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10068445 97 - 23771897 --------AACCAGGACACCACCAAUCGGGAUAUCCUCAGCCGGGACAUUCGUGGAACCCUCCGCCACCACAGUUUGGAUUUUCAGGGUACCCACCGCCACCUCA --------....(((.............((((.((((.....)))).))))((((.(((((......(((.....)))......)))))..)))).....))).. ( -21.70) >DroSec_CAF1 7123 97 - 1 --------AACCAGGAUACCCCCAAUCGAGAUAUCCUCAGCCGGGACAUUCCUGGAACCCUCCGCCACCACAGAUUGGAUUUUCAGGGUACCCACCUCCACCCCA --------.....((.((((((((((((((.....)))..(((((.....))))).................)))))).......))))).))............ ( -27.01) >DroSim_CAF1 7510 97 - 1 --------AACCAGGAUACCCCCAAUCGAGAUAUCCUCAGCCGGGACAUUCCUGGAACCCUCCGCCACCACAGUUUGGAUUUUCAGGGUACCCACCGCCACCCCA --------..((((((....(((....(((.....)))....)))....)))))).(((((......(((.....)))......)))))................ ( -25.20) >DroEre_CAF1 7297 105 - 1 AUUUCCACAACCAGGAUACCCCCAAUCAGGAUAUCCUCAGCCAGGACAUUCCUGGAACCCCCCACCACCACAGUCUGGAUUUUCGGAGUACCCACCACCACCCCA ..((((......((((((.((.......)).))))))...(((((.....)))))............(((.....)))......))))................. ( -21.20) >DroYak_CAF1 8318 93 - 1 ------------AGGAUACCGCCCAUCGGGAUAUCCUCAGACAGGACAUUCCUGGAACGCCCCACCGCCACAGUCUGGAUUUUCGGGUUACCCACCACCACCCCA ------------.(((((...(((...))).)))))(((((((((.....)))((......)).........))))))......((((...........)))).. ( -23.00) >consensus ________AACCAGGAUACCCCCAAUCGGGAUAUCCUCAGCCGGGACAUUCCUGGAACCCUCCGCCACCACAGUUUGGAUUUUCAGGGUACCCACCACCACCCCA ............((((((((........)).))))))...(((((.....))))).(((((......(((.....)))......)))))................ (-16.24 = -17.12 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:56 2006