Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 10,065,240 – 10,065,339 |
Length | 99 |
Max. P | 0.732169 |
Location | 10,065,240 – 10,065,339 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 81.55 |
Mean single sequence MFE | -35.13 |
Consensus MFE | -21.05 |
Energy contribution | -24.42 |
Covariance contribution | 3.36 |
Combinations/Pair | 1.21 |
Mean z-score | -2.25 |
Structure conservation index | 0.60 |
SVM decision value | 0.43 |
SVM RNA-class probability | 0.732169 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10065240 99 - 23771897 CUUCAGGAGUUCUGUUCGCUGAUCACUAUCACAGGUGGAAUAGUGAUGGCGGUGAACCGAAUGGACUUGGACGCCCUGCUGGCAGGGAGAUAUAUGAAU .((((((.((((.((((((((((((((((..(....)..))))))))..)))))))).))))...))))))(.(((((....))))).).......... ( -37.40) >DroSec_CAF1 3796 99 - 1 CUUAAGGAGUUCUGUUCGCUGCUCACUAUCACAGGUGGAAUAGUGAUGGCGGUGAACCGAAUGGAUUUGGACGCCCUGCUGGCAGGGAGAUAUAUGAAU .(((((..((((.((((((((((((((((..(....)..)))))))..))))))))).))))...))))).(.(((((....))))).).......... ( -36.20) >DroSim_CAF1 4156 99 - 1 CUUCAGGAGUUCUGUUCGCUGCUCACUAUUACAGGUGGAAUAGUGAUGGCGGUGAACCGAAUGGAUUUGGACGCCCUGCUGGCAGGGAGAUAUAUGAAU .((((((.((((.(((((((((((((((((.(....).))))))))..))))))))).))))...))))))(.(((((....))))).).......... ( -36.90) >DroEre_CAF1 4071 99 - 1 CUCCAGGAAUUCUGUUCGCUGCUCACUCUCACCGGUGGAAUAGUGAUGGCGGUGAACAGUAUGGAUCCAGACGCCCUGCUGGCAGGGAGAUAUAUGAAU .((((......((((((((((((((((.(((....)))...)))))..)))))))))))..))))......(.(((((....))))).).......... ( -35.50) >DroYak_CAF1 4986 98 - 1 -UUUAGGAAUUCUGUUCGCUGCUCACGCUCACAGGCGGCAUAGUGAUGGCGGUGAACAGCAUGGAUCUGGACGCCCUGCUGGCAGGGAGAUAUAUGAAU -..........(((((((((((...((((....)))).(((....))))))))))))))((((.((((.....(((((....))))))))).))))... ( -34.10) >DroMoj_CAF1 13875 99 - 1 CUUCAGCAACUCUGCUGCCUGCUCACCAUUGUUGGCGGCAUUCUAUUUACUGCGACGCAGCUGAAUGUGGACGCCAUGAUGGCUGCGCGUUACCUUAAU ...(((((....)))))...((.((((((..(.((((((((((......((((...))))..))))))...)))))..)))).)).))........... ( -30.70) >consensus CUUCAGGAAUUCUGUUCGCUGCUCACUAUCACAGGUGGAAUAGUGAUGGCGGUGAACCGAAUGGAUUUGGACGCCCUGCUGGCAGGGAGAUAUAUGAAU .((((((.((((.((((((((((((((((..(....)..)))))))..))))))))).))))...))))))(.(((((....))))).).......... (-21.05 = -24.42 + 3.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:55 2006