| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,056,964 – 10,057,064 |
| Length | 100 |
| Max. P | 0.806939 |
| Location | 10,056,964 – 10,057,064 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 80.13 |
| Mean single sequence MFE | -18.65 |
| Consensus MFE | -14.61 |
| Energy contribution | -14.39 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.806939 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10056964 100 + 23771897 AUAAAUACAUGACUCACUUAAUUAGCGCUCACAGAUUUUUAAUGGCGUUAAUUGCAUGUCAUAAAUGACACUCUCCAACAAAC----AAGAAAGGUGCAACCAA------- ........(((((.....(((((((((((..............)))))))))))...)))))...((.((((...........----......)))))).....------- ( -16.17) >DroPse_CAF1 121565 111 + 1 ACAAAUAUAUGCCGCAGUUAAUUAGCGCUCACUGAUUUUUAAUAGCGUUAAUUGCACGGCAUAAAUGAUACUCACCAGCAGCAGCAGCAGCAAUAACAGAACAGCAAAUGG .......(((((((..((.((((((((((..............)))))))))))).)))))))..............((.((....)).)).................... ( -23.64) >DroSec_CAF1 101732 100 + 1 AUAAAUACAUGACGCACUUAAUUAGCGCUCAUAGGUUUUAAAUGGCGUUAAUUGCAUGUCAUAAAUGACACUCUCCAACAAGC----AAGAAAGAUGCAACCAA------- .............(((((((((((((((.(((.........))))))))))))...(((((....))))).............----....))).)))......------- ( -18.90) >DroEre_CAF1 106131 100 + 1 AUAAAUACAGGACGCACUUAAUUAGCGCGCGCAGAUUUUUAAUAGCGUUAAUUGCAUGUCAUAAAUGACACUAUCCAACAAAC----GAGAAAGAACCAACCAA------- .........(((.(((....((((((((................))))))))))).(((((....)))))...))).......----.................------- ( -17.39) >DroYak_CAF1 112023 100 + 1 AUAAAUACAUGACGCACUUAAUUAGCGCUCGCAGAUUUUUAAUGGCGUUAAUUGCAUGUCAUAUAUGACACUCUCCAGCAAAC----AAGAAAUAACCAACCAA------- .............((...(((((((((((..............)))))))))))..(((((....))))).......))....----.................------- ( -16.04) >DroAna_CAF1 102664 97 + 1 AUAAAUAUAUGCCGCAGUUAAUUAGCGCUCACAGAUUUUUAAUGGCGUUAAUUGCAUGGCAUAAAUGACACAGUCCACAAAA-------AAAAAGUGAAAACAG------- .......(((((((..((.((((((((((..............)))))))))))).)))))))...................-------.....((....))..------- ( -19.74) >consensus AUAAAUACAUGACGCACUUAAUUAGCGCUCACAGAUUUUUAAUGGCGUUAAUUGCAUGUCAUAAAUGACACUCUCCAACAAAC____AAGAAAGAACCAACCAA_______ ........((((((....((((((((((................))))))))))..))))))................................................. (-14.61 = -14.39 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:54 2006