Locus 3426

Sequence ID 3L_DroMel_CAF1
Location 10,056,220 – 10,056,328
Length 108
Max. P 0.645167
window5355

overview

Window 5

Location 10,056,220 – 10,056,328
Length 108
Sequences 6
Columns 115
Reading direction forward
Mean pairwise identity 91.48
Mean single sequence MFE -31.47
Consensus MFE -27.06
Energy contribution -27.25
Covariance contribution 0.19
Combinations/Pair 1.03
Mean z-score -1.57
Structure conservation index 0.86
SVM decision value 0.23
SVM RNA-class probability 0.645167
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10056220 108 + 23771897
AGU-----GGAAAAGGAAAAGCGAGCAGGUGGAAAACC--CCACUGGAAGCGCCGUUUCCGCUGUCAGUUAAGUCAAAUAACGGUGAAAAGACACGGAGCUGUUGCAGCUACACA
.((-----(.....(((((.(((..(.(((((......--))))).)...)))..)))))((((((((((..((......)).(((......)))..)))))..)))))..))). ( -33.00)
>DroSec_CAF1 100974 108 + 1
AGA-----GGAAAAGGAAAAGCGAGCAGGUGGAAAACC--CCACUGGAAGCGCCGUUUCCGCUGUCAGUUAAGUCAAAUAACGGUGAGAAGACACGGAGCUGUUGCAGCUACACA
...-----(((((.((....((...(.(((((......--))))).)..)).)).)))))((((((((((..((......)).(((......)))..)))))..)))))...... ( -30.70)
>DroSim_CAF1 110987 108 + 1
AGA-----GGAAAAGGAAAAGCGAGCAGGUGGAAAACC--CCACUGGAAGCGCCGUUUCCGCUGUCAGUUAAGUCAAAUAACGGUGAGAAGACACGAAGCUGUUGCAGCUACACA
...-----(((((.((....((...(.(((((......--))))).)..)).)).)))))((((((((((..((......)).(((......)))..)))))..)))))...... ( -30.60)
>DroEre_CAF1 105380 108 + 1
AAG-----GGAAAAGGAAAAGCGAGCAGGUGGAAAACC--CCACUGGAAGCGCCGUUUCCGCUGUCAGUUAAGUCAAAUAACGGUGAGAAGACACGGAGCUGUUGCAGCUACACU
...-----(((((.((....((...(.(((((......--))))).)..)).)).)))))((((((((((..((......)).(((......)))..)))))..)))))...... ( -30.50)
>DroYak_CAF1 111188 108 + 1
GAG-----GGAAAUGGAAAAGCGAGCAGGUGGAAAACC--CCACUGGAAGCGCCGUUUCCGCUGUCAGUUAAGUCAAAUAACGGUGAGAAGACACGGAGCUGUUGCAGUUACACU
...-----((((((((....((...(.(((((......--))))).)..)).))))))))((((((((((..((......)).(((......)))..)))))..)))))...... ( -31.90)
>DroAna_CAF1 101983 113 + 1
AAAGUCGCGGAAAAGG-AAAGCGAGUUGGUGGAAAACCGCCCACUG-AAGCGACAUUUCCGCUGUCAGUUAAGUCAAAACACGGUGAGAAGACACGAAGCUGUUGCCGCUACAGA
...((.((((....((-(((.((..(..((((........))))..-)..))...)))))(((.((.(((.......)))...(((......)))))))).....)))).))... ( -32.10)
>consensus
AAA_____GGAAAAGGAAAAGCGAGCAGGUGGAAAACC__CCACUGGAAGCGCCGUUUCCGCUGUCAGUUAAGUCAAAUAACGGUGAGAAGACACGGAGCUGUUGCAGCUACACA
........(((((.((....((.....(((((........)))))....)).)).)))))((((((((((..((......)).(((......)))..)))))..)))))...... (-27.06 = -27.25 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:53 2006