| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 10,051,864 – 10,051,968 |
| Length | 104 |
| Max. P | 0.677279 |
| Location | 10,051,864 – 10,051,968 |
|---|---|
| Length | 104 |
| Sequences | 5 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 87.74 |
| Mean single sequence MFE | -18.38 |
| Consensus MFE | -13.12 |
| Energy contribution | -13.64 |
| Covariance contribution | 0.52 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.677279 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10051864 104 - 23771897 ACACUUACCGGUUUCUAUACCUUCAAUACAAUGGAGGUCAAAACAAAAUCAAAGAGAAUUGAAAACACUCUUUUGUUAAACAUUUUA-AGACUCUUAAAACUGAA ........((((((....(((((((......))))))).............(((((..(((((((((......)))......)))))-)..))))).)))))).. ( -17.20) >DroSec_CAF1 96636 105 - 1 ACACUUACCGGUUUCUAUACCAUCAAUACAAUGGAGGUCAAAAUAAAAUCAAAGAGAAUUGGAAACACUCUUUUGUUAAAAAUUUUAAAGACUCUUAAAACUGAA ........((((((.....((((.......)))).(((((((((..(((.((((((...((....)))))))).)))....)))))...))))....)))))).. ( -16.10) >DroSim_CAF1 106619 104 - 1 ACACUUACCGGUUUCUAUACCAUCAAUACAAUGGAGGUCAAAAUAAAAUCAAAGAGAACUGGAAACACUCUUUUGUUAAAAAUUUUA-AGACUCUUAAAACUGAA ........((((((.....((((.......)))).(((((((((..(((.((((((...((....)))))))).)))....))))).-.))))....)))))).. ( -16.50) >DroEre_CAF1 101036 103 - 1 ACACUUGCCGGUUUCUGUGCCUCCAAUGCAAUGGAGGUCAAAAUAAAAUCAAAGGGAAUUGC-CACUCUCUUCUGUUGAACAUUUUC-AUACUCUUCAAACUUAG .........(((((...((((((((......)))))).)).....))))).((((((.....-...))))))..((((((....)))-).))............. ( -17.20) >DroYak_CAF1 101537 104 - 1 ACACUUACCGGUUUCUAUACCUCCAAUACAAUGGAGGUCAAAAUCAAAUCAAAGGGAAUGGCACACUCUCUUUUGGUAAGCAUUUUC-AUACUCUUCAAACUUAA ...(((((((((((....(((((((......)))))))..))))).....(((((((.((...)).))))))).)))))).......-................. ( -24.90) >consensus ACACUUACCGGUUUCUAUACCUUCAAUACAAUGGAGGUCAAAAUAAAAUCAAAGAGAAUUGCAAACACUCUUUUGUUAAACAUUUUA_AGACUCUUAAAACUGAA ........((((((....(((((((......)))))))........(((.((((((...((....)))))))).)))....................)))))).. (-13.12 = -13.64 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:50 2006