Locus 3423

Sequence ID 3L_DroMel_CAF1
Location 10,049,732 – 10,049,823
Length 91
Max. P 0.768058
window5351

overview

Window 1

Location 10,049,732 – 10,049,823
Length 91
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 81.20
Mean single sequence MFE -27.78
Consensus MFE -16.31
Energy contribution -16.76
Covariance contribution 0.45
Combinations/Pair 1.21
Mean z-score -2.30
Structure conservation index 0.59
SVM decision value 0.52
SVM RNA-class probability 0.768058
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10049732 91 - 23771897
UACGGAUUUCGGGGUCUCAGCC-CCGUUCUACGUAUCCUAAAU-------CCAAAAUCCGGCCAACAACAGCUUGGCACUGCGGUUGCUUAGGCAACCA
..(((((((((((((....)))-))).................-------...)))))))(((((.......))))).....((((((....)))))). ( -31.85)
>DroSec_CAF1 94529 90 - 1
UACGGAUUU-GGGGACUCAGCC-CCGUUCAGCGUAUCCUAAAU-------CCAAAAUCCAGCCAACAACAGCUUGGCACUGCGGUUGCUUAGGCAACCA
...((((((-((((.....((.-.......))...))))))))-------))........(((((.......))))).....((((((....)))))). ( -30.40)
>DroSim_CAF1 104492 90 - 1
UACGGAUUU-GGGGACUCAGCC-CCGUUCAGCGUAUCCUAAAU-------CCAAAAUCCAGCCAACAACAGCUUGGCACUGCGGUUGCUUAGGCAACCA
...((((((-((((.....((.-.......))...))))))))-------))........(((((.......))))).....((((((....)))))). ( -30.40)
>DroEre_CAF1 98957 90 - 1
UACGGCUUU-GGGAACUCAGCC-CCGUUCCACGUAUAGCAAAU-------CCAAAAUCCGGCCAACAACAGCUUGGCACUGCGGUUGCUUAGGCAACCA
..(((.(((-((((((......-..)))))..(.....)....-------.))))..)))(((((.......))))).....((((((....)))))). ( -26.10)
>DroYak_CAF1 99422 99 - 1
UACGGAUUUAGAGAACUCAGCCGCCGUUCUACGUAUCCUAAAUCCAAAAUCCAAAAUCCGGCCAACAACAGCUUGGCACUGCGGUUGCUUAGGCAACCA
...(((((((((((((.........))))).......))))))))...............(((((.......))))).....((((((....)))))). ( -27.31)
>DroAna_CAF1 95769 74 - 1
UAGGCUUUU-GGU-----------CGUUG-----GUCCUUGGU-------CCUGGGUCC-UCUAACAACAGCUUGGCACUGCGGUUGCUUAGGCUACCA
((((((...-((.-----------(....-----).))..)).-------))))(((..-(((((((((.((........)).)))).)))))..))). ( -20.60)
>consensus
UACGGAUUU_GGGGACUCAGCC_CCGUUCAACGUAUCCUAAAU_______CCAAAAUCCGGCCAACAACAGCUUGGCACUGCGGUUGCUUAGGCAACCA
...((((((.((......................................)).)))))).(((((.......))))).....((((((....)))))). (-16.31 = -16.76 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:49 2006