Locus 342

Sequence ID 3L_DroMel_CAF1
Location 989,753 – 989,843
Length 90
Max. P 0.519791
window508

overview

Window 8

Location 989,753 – 989,843
Length 90
Sequences 5
Columns 91
Reading direction forward
Mean pairwise identity 89.05
Mean single sequence MFE -25.98
Consensus MFE -17.48
Energy contribution -17.76
Covariance contribution 0.28
Combinations/Pair 1.12
Mean z-score -2.12
Structure conservation index 0.67
SVM decision value -0.03
SVM RNA-class probability 0.519791
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 989753 90 + 23771897
AACAUUUAAUGGGUAUUCCCUA-UUUGUUUCGGUGAUAAUCACGUGAAAUGGUAGAAAGGCUGUGCAAAACAGAGCAAAGCGUCUGUUCUU
..........(((....)))..-.(..((((((((.....))).)))))..)((((...(((.(((........))).))).))))..... ( -19.90)
>DroSec_CAF1 8006 90 + 1
AACAUUUAAUGGGUAUUCCCUA-UUUGUUUCGGUGAAAAUCACAUGAAAUUGGGGAAAGACUGCCCAAAACAGAGCAAAGCGUCUGUUCUU
.........(((((((((((((-...(((((((((.....))).)))))))))))))....)))))).((((((((...)).))))))... ( -28.70)
>DroSim_CAF1 8208 90 + 1
AACCUUUAAUGGGUAUUCCCUA-UUUGUUUCGGUGAUAAUCACGUGAAAUGGGGGAAAGACUGCCCGAAACAGAGCAAAGCGUCUGUUCUU
.........((((((((((((.-...(((((((((.....))).)))))).))))))....)))))).((((((((...)).))))))... ( -27.60)
>DroEre_CAF1 7866 89 + 1
CACAUUUAAUGGGUAUUCCCUA-UUUGUUUCGGCGCUAAUCACGUGAAGUGG-GGAAUAGGUGCCCGGAACAGAGCAAAACCUCUGUUCUU
..........((((((((((((-(((....((..........))..))))))-)))....))))))(((((((((......))))))))). ( -30.40)
>DroYak_CAF1 8577 91 + 1
AACAUUUAAUGGGUAUUCCCUAGUUUGUUUCGGUGAUAAUCACGUGAAGUGGGGGAAUGGCUGUCCGAAACAGAGCAAAACGUCUGUUCUU
........((((.(((((((....(..((((((((.....))).)))))..)))))))).))))..(((.((((........))))))).. ( -23.30)
>consensus
AACAUUUAAUGGGUAUUCCCUA_UUUGUUUCGGUGAUAAUCACGUGAAAUGGGGGAAAGGCUGCCCGAAACAGAGCAAAGCGUCUGUUCUU
.........(((((((((((....(..((((((((.....))).)))))..))))))....)))))).((((((........))))))... (-17.48 = -17.76 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:38 2006