Locus 3418

Sequence ID 3L_DroMel_CAF1
Location 10,026,754 – 10,026,848
Length 94
Max. P 0.752154
window5342

overview

Window 2

Location 10,026,754 – 10,026,848
Length 94
Sequences 5
Columns 94
Reading direction forward
Mean pairwise identity 89.47
Mean single sequence MFE -19.06
Consensus MFE -14.25
Energy contribution -15.05
Covariance contribution 0.80
Combinations/Pair 1.00
Mean z-score -1.89
Structure conservation index 0.75
SVM decision value 0.48
SVM RNA-class probability 0.752154
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10026754 94 + 23771897
CAGCAAGAAAUGCCGGGAAAAUGCAGGGAAAUGCUGGCAAAAUACUAGGAAAAUAGAAUGGGUAUGGAAAGUCGACGGACUAAGGUCUGCGAAA
.........(((((.......(((.((......)).))).....(((......)))....)))))......(((.(((((....)))))))).. ( -18.50)
>DroSec_CAF1 79465 94 + 1
CAGCAAGAAAUGCCGGGAAAAUGCAGGGAAAUGCUGGCAAAAUACUAGGAAAAUAGAAUGGGUAUGGAAAGUCGACGGACUAAGGUCUGCGAAA
.........(((((.......(((.((......)).))).....(((......)))....)))))......(((.(((((....)))))))).. ( -18.50)
>DroSim_CAF1 89275 94 + 1
CAGCAAGAAAUGCCGGGAAAAUGCAGGGAAAUGCUGGCAAAAUACUAGGAAAAUAGAAUGGGUAUGGAAAGUCGACGGACUAAGGUCUGCGAAA
.........(((((.......(((.((......)).))).....(((......)))....)))))......(((.(((((....)))))))).. ( -18.50)
>DroEre_CAF1 81382 73 + 1
CAGCAAGAAAUG---------------------CUGGCAAAAUACUAGGAGACCAGAAUGGGUAUGGAAAGUCGACGGACUAAGGUCUGCGAAA
(((((.....))---------------------)))........(((....(((......))).)))....(((.(((((....)))))))).. ( -18.60)
>DroYak_CAF1 81608 94 + 1
CAGCAAGAAAUGCCGGGAAAAUGCAGGGAAACGCUGGCAAAAUACUAGGAAAAUAGAAUGGGUAUGGAAAGUCGACGGACUAAGGUCUGCGAAA
.........(((((.......((((((....).)).))).....(((......)))....)))))......(((.(((((....)))))))).. ( -21.20)
>consensus
CAGCAAGAAAUGCCGGGAAAAUGCAGGGAAAUGCUGGCAAAAUACUAGGAAAAUAGAAUGGGUAUGGAAAGUCGACGGACUAAGGUCUGCGAAA
..........((((((.................))))))..(((((..............)))))......(((.(((((....)))))))).. (-14.25 = -15.05 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:40 2006