Locus 3417

Sequence ID 3L_DroMel_CAF1
Location 10,018,788 – 10,018,879
Length 91
Max. P 0.983219
window5341

overview

Window 1

Location 10,018,788 – 10,018,879
Length 91
Sequences 4
Columns 95
Reading direction forward
Mean pairwise identity 93.91
Mean single sequence MFE -22.91
Consensus MFE -22.24
Energy contribution -22.48
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -2.19
Structure conservation index 0.97
SVM decision value 1.94
SVM RNA-class probability 0.983219
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10018788 91 + 23771897
AUGUCCUGCGAAACACACACACACA----CAAACAACCGGAGACCAGAGACGCCCGAAAUCCUUUAGUCAAGUUUCGCAGGAUGGCGAAUUUAUU
..((((((((((((...........----.........(....)....(((...............)))..))))))))))))............ ( -23.86)
>DroSec_CAF1 71565 91 + 1
AUGUCCUGCGAAACACAAACACACA----CAAACAACCGGAGACCAGAGACGCCCGAAAUCCUUUAGUCAAGUUUCGCAGGAUGGCGAAUUUAUU
..((((((((((((...........----.........(....)....(((...............)))..))))))))))))............ ( -23.86)
>DroSim_CAF1 81358 91 + 1
AUGUCCUGCGAAACACAAACACACA----CAAACAACCGGAGACCAGAGACGCCCGAAAUCCUUUAGUCAAGUUUCGCAGGAUGGCGAAUUUAUU
..((((((((((((...........----.........(....)....(((...............)))..))))))))))))............ ( -23.86)
>DroYak_CAF1 73261 95 + 1
AUGUCCUGCAAAACUCACACACCCAAACACAAACAACCGGAGACCAGGGACGCCGAAAAUCCUUUAGUCAAGUUUCGCAGGAUGGCGAAUUUAUU
..(((((((.(((((.......((..............)).(((.(((((.........)))))..))).))))).)))))))............ ( -20.04)
>consensus
AUGUCCUGCGAAACACAAACACACA____CAAACAACCGGAGACCAGAGACGCCCGAAAUCCUUUAGUCAAGUUUCGCAGGAUGGCGAAUUUAUU
..((((((((((((........................(....)....(((...............)))..))))))))))))............ (-22.24 = -22.48 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:39 2006