Locus 3415

Sequence ID	3L_DroMel_CAF1
Location	10,015,575 – 10,015,681
Length	106
Max. P	0.950160

overview

Window 8

Location	10,015,575 – 10,015,681
Length	106
Sequences	4
Columns	110
Reading direction	reverse
Mean pairwise identity	82.95
Mean single sequence MFE	-49.23
Consensus MFE	-34.09
Energy contribution	-37.40
Covariance contribution	3.31
Combinations/Pair	1.09
Mean z-score	-2.39
Structure conservation index	0.69
SVM decision value	1.40
SVM RNA-class probability	0.950160
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 10015575 106 - 23771897
GUCAAGGCGGUCAGCUGAU-GGGGAAUUGC-AGAGUCGGAGGUCACCAGUCGGCGGUGGUCACUGUCCACUGGUGUUCCUCUGGACUUGGCUGC--AGCCCCCGGGCCAA
.....(((.(((....)))-((((..((((-(((((((((((.(((((((.((((((....)))))).)))))))..))))).))))...))))--)).))))..))).. ( -52.60)
>DroSec_CAF1 68434 92 - 1
GUCAAGGCGGUCAGCUGGU-GGGGAAUAGC-GGGGUCGGAGGUCACCAGUCG---GUGGUCACUGUCCAAUGGUGGACCUCUGGAC-------------CCCCGGGCCAA
((....))((((.((((..-......))))-(((((((((((((((((..((---((....)))).....)))).))))))).)))-------------)))..)))).. ( -42.70)
>DroSim_CAF1 78098 103 - 1
GUCAAGGCGGUCAGCUGGU-GGGGAGUAGC-GGGGUCGGAGGUCACCAGUCG---GUGGUCACUGUCCACUGGUGGACCUCUGGACUUGGCUGC--AGCCCCCGGGCCAA
((....))(((...((((.-(((..(((((-.((((((((((((((((((.(---(..(...)..)).)))))).))))))).))))).)))))--..)))))))))).. ( -53.60)
>DroYak_CAF1 70090 110 - 1
GUCAAGGCGGUCAGCUGUUUGGGGAGUUGGAGGAUUCGGAGGUCACCAGUCGGCAGUGGUCACUGUACACUGGUGGACCUAUGGAUUUGGAACCCGAGGCCCCGGGCCAA
.....(((.....)))((((((((..((((.(((((((.(((((((((((..(((((....)))))..)))))).))))).))))))).....))))..))))))))... ( -48.00)
>consensus
GUCAAGGCGGUCAGCUGGU_GGGGAAUAGC_GGAGUCGGAGGUCACCAGUCG___GUGGUCACUGUCCACUGGUGGACCUCUGGACUUGGCUGC__AGCCCCCGGGCCAA
.....(((((....))....((((....((..((((((((((((((((((.((((((....)))))).))))))).)))))).)))))....)).....))))..))).. (-34.09 = -37.40 +   3.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:36 2006