Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 10,010,886 – 10,010,987 |
Length | 101 |
Max. P | 0.842176 |
Location | 10,010,886 – 10,010,987 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 80.96 |
Mean single sequence MFE | -15.90 |
Consensus MFE | -10.32 |
Energy contribution | -11.66 |
Covariance contribution | 1.34 |
Combinations/Pair | 1.07 |
Mean z-score | -2.03 |
Structure conservation index | 0.65 |
SVM decision value | 0.75 |
SVM RNA-class probability | 0.842176 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 10010886 101 + 23771897 CUUCAUAAAAAAUCCACCAUUUGUCGUCGUCACAAAUAACAAAGAGCACUCGCUGAACGGCUGAUGACAAAAUACAGAAAAAAACAGCGUAAAAACAA--GAA ...................(((((((((...............((....))(((....))).)))))))))...........................--... ( -13.90) >DroSec_CAF1 63771 98 + 1 CUUCAUAAAAAAUCCACCAUUUGUCGUCGUCGCAAAUAACAAAGGGCACUCGCUGAGCGGCUGAUGACAAAAUACAGAAAAAUAA---GAAAAAACAA--GAA ...................((((((((((((((......(...)(((....)))..))))).)))))))))..............---..........--... ( -18.10) >DroSim_CAF1 73463 98 + 1 CUUCAUAAAAAAUCCACCAUUUGUCGUCGUCGCAAAUAACAAAGGGCACUCGCUGAGCGGCUGAUGACAAAAUACAGAAAAAUAA---GAAAAAACAA--GAA ...................((((((((((((((......(...)(((....)))..))))).)))))))))..............---..........--... ( -18.10) >DroEre_CAF1 65877 99 + 1 CUUCAUAAAAAAUCCACCAUUUGUCGUCGUCGCAAAUAACAAAGGACACUCUCUCAGCGGCUGAUGACAAAAUACAAUAAAAAAUAA-AAAGAAACGAAA--- ...................((((((((((((((.......................))))).)))))))))................-............--- ( -16.80) >DroWil_CAF1 88737 82 + 1 CUUCAUAAAAAAUCAACCAUUUGUCG---UCGCAAAUAACAAAGGGCACCCGUUGAG------AUGGCACAAG-CGCAAAAACAA---GCAAAAA-------- .....................(((((---((.(((........((....)).))).)------))))))....-.((........---)).....-------- ( -12.60) >consensus CUUCAUAAAAAAUCCACCAUUUGUCGUCGUCGCAAAUAACAAAGGGCACUCGCUGAGCGGCUGAUGACAAAAUACAGAAAAAAAA___GAAAAAACAA__GAA ...................((((((((((((((.......................))))).)))))))))................................ (-10.32 = -11.66 + 1.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:35 2006