Locus 3410

Sequence ID 3L_DroMel_CAF1
Location 9,993,954 – 9,994,045
Length 91
Max. P 0.723559
window5330

overview

Window 0

Location 9,993,954 – 9,994,045
Length 91
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 82.13
Mean single sequence MFE -26.70
Consensus MFE -17.13
Energy contribution -18.88
Covariance contribution 1.75
Combinations/Pair 1.08
Mean z-score -2.19
Structure conservation index 0.64
SVM decision value 0.41
SVM RNA-class probability 0.723559
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9993954 91 + 23771897
---------AUUACAAAUUGUUUUCUGUGCAUUGAGUACACUUUGGUAACAUUUUCAGUUCGGGGCUAGCCUGUCCCGAACCAAACGUAUGGCAAGACAA
---------........(((((((((((((((..((.....))..))..........(((((((((......))))))))).....)))))).))))))) ( -26.70)
>DroSec_CAF1 46570 91 + 1
---------GUUACAAAUUGUUUUCUGUGCAUUGAGUACACUUUGGUAACAUUUCCAGUUCGGGGCUAGCCUGUCCCGAACCAAACGUAUGGGAAGACAA
---------........(((((((((((((.....))))....(((........)))(((((((((......)))))))))..........))))))))) ( -29.10)
>DroSim_CAF1 56281 91 + 1
---------AUUACAAAUUGUUUUCUGUGCAUUGAGUACACUUUGGUAACAUUUCCAGUUCGGGGCUAGCCUGUCCCGAACCAAACGUAUGGCAAGACAA
---------........(((((((((((((.............(((........)))(((((((((......))))))))).....)))))).))))))) ( -28.40)
>DroEre_CAF1 48770 91 + 1
---------AUUGCAAAUUGUUUUCGGUGCAUUGUCUACACUUUGGUAACAUUUCCAGUUCGGGGAUGGCCUGUCCCGAAGCAAACGUAUGGCAAGACAA
---------.((((....(((((((((..((.((....))....(((..(((..((.....))..))))))))..))))...)))))....))))..... ( -22.90)
>DroYak_CAF1 47562 91 + 1
---------AUUACAAAUUGUUCUCCGUGCAUCGAGUACACUUUGGUAACAUUGCCAGUUCGGGGAUGGCCUGUCCCGAACCAAACGUAUGGCAAGACAA
---------........((((..(((((((.............(((((....)))))((((((((........)))))))).....)))))).)..)))) ( -26.60)
>DroAna_CAF1 45197 100 + 1
AAAUGUUAAGCCAUAUUUUUCUUUCUCUGCAAAAGCUUCACUUUGGCAAGAACUCCUGUUCGAGGGUGUCCUGGCCCCCAACUAACGUAUGGCAAGACAA
...((((..(((((((.......((..(((.((((.....)))).))).((((....))))))(((.((....)).))).......)))))))..)))). ( -26.50)
>consensus
_________AUUACAAAUUGUUUUCUGUGCAUUGAGUACACUUUGGUAACAUUUCCAGUUCGGGGCUAGCCUGUCCCGAACCAAACGUAUGGCAAGACAA
.................(((((((((((((.............(((........)))((((((((........)))))))).....)))))).))))))) (-17.13 = -18.88 +   1.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:29 2006