Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 978,381 – 978,474 |
Length | 93 |
Max. P | 0.923790 |
Location | 978,381 – 978,474 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 75.30 |
Mean single sequence MFE | -28.44 |
Consensus MFE | -16.78 |
Energy contribution | -16.20 |
Covariance contribution | -0.58 |
Combinations/Pair | 1.43 |
Mean z-score | -1.88 |
Structure conservation index | 0.59 |
SVM decision value | 1.16 |
SVM RNA-class probability | 0.923790 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 978381 93 - 23771897 -UAUUUUCGUUAGAACU--AAGAACCCACAGAUACUGCAUUAUGCUGGGGUUGGACUGCACAAUCUCCAGUCCCUCAGUGGCGUAGUAGGGUCCAC -....(((....)))..--..(.((((.....((((((.((((...(((..((((..........))))..)))...)))).)))))))))).).. ( -25.40) >DroVir_CAF1 2930 94 - 1 -UGGU-ACAUUAUUUCCGUAUUUACUCACAGAAACUGAAUGAUGCUGGGAUUAGACUGCACAAUUUCUAAUCCCUCUGUGGCAUAGUACGGACCGC -....-........((((((((...(((((((..(.....).....(((((((((..........))))))))))))))))...)))))))).... ( -29.00) >DroGri_CAF1 790 94 - 1 -UGAU-UCGUUAUUUCUCAGUUGACUUACAGAUACUGAAUGAUGCUGGGAUUGGACUGGACAAUGUCUAGGCCCUCUGUGGCAUAGUAGGGGCCAC -....-..(((...(((((((.......(((...)))......)))))))...)))(((((...)))))(((((.(((........)))))))).. ( -26.32) >DroSec_CAF1 848 93 - 1 -UAAUUUAGUUAGAACU--AAGGACCCACAGAUACUGCAUUAUGCUGGGGUUGGACUGCACAAUCUCUAGUCCCUCAGUAGCGUAGUAGGGUCCGC -....(((((....)))--))((((((.....((((((....((((((((...(((((.........)))))))))))))..)))))))))))).. ( -33.00) >DroEre_CAF1 791 94 - 1 AUAUUUGGACUAGAGCU--GGCAACCCACAGAUACUGCAUUAUGCUGGGGUUGGACUGCACAAUCUGCAGUCCCUCAGUGGCGUAGUAGGGGCCGC ..............((.--(((..(((.....((((((....((((((((...(((((((.....)))))))))))))))..)))))))))))))) ( -33.70) >DroAna_CAF1 778 92 - 1 -UAUCCUUG-UGGGCUU--AAGUACUUACAGAUACUGCAUUAUGCUUGGAUUGGACUGCACUAUUUCCAAACCCUCAGUGGCAUAAUAAGGUCCAC -.......(-(((((((--.((((........))))..((((((((.((.(((((..........))))).))......)))))))).)))))))) ( -23.20) >consensus _UAUUUUCGUUAGAACU__AAGAACCCACAGAUACUGCAUUAUGCUGGGAUUGGACUGCACAAUCUCCAGUCCCUCAGUGGCAUAGUAGGGUCCAC ........................(((.(((...))).(((((((((((((((((..........))))))))).....)))))))).)))..... (-16.78 = -16.20 + -0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:37 2006