Locus 3409

Sequence ID 3L_DroMel_CAF1
Location 9,991,623 – 9,991,715
Length 92
Max. P 0.770078
window5329

overview

Window 9

Location 9,991,623 – 9,991,715
Length 92
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 81.05
Mean single sequence MFE -16.53
Consensus MFE -11.44
Energy contribution -11.58
Covariance contribution 0.14
Combinations/Pair 1.19
Mean z-score -1.79
Structure conservation index 0.69
SVM decision value 0.53
SVM RNA-class probability 0.770078
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9991623 92 - 23771897
AAAUCUGGUCAUUUCACGCUGUUUUGAGCCCCCAGACAGCUCGUUAACCUUAUACCCAAA-----AUACAGAUACAGAUAUACAUAAAUAUAAACAC
..((((((((.......(((((((.(.....).)))))))..((................-----..)).))).))))).................. ( -12.87)
>DroPse_CAF1 48144 86 - 1
AAAUUUGCUCAUUUCACGCUGUUUUGGGGCUCGAGGCAGCUCGUUAACCUCGUACUUCCACCUUGCUCCACCUCCAGUU----GCAAAUA-------
..((((((.........((((...((((((.(((((...........)))))............))))))....)))).----)))))).------- ( -19.42)
>DroSec_CAF1 44094 92 - 1
AAAUCUGCUCAUUUCACGCUGUUUUGAGCCUCCGGACAGCUCGUUAUCCUUAUACCAAAA-----AGGCAGAUACAGAUAUACAUAAAUAUAAACAC
..((((((.........((((((..(.....)..))))))........(((........)-----))))))))........................ ( -16.50)
>DroSim_CAF1 53247 92 - 1
AAAUCUGCUCAUUUCACGCUGUUUUGAGCCUCCGGACAGCUCGUUAACCUUAUACCAAAA-----AUGCAGAUACAGAACUACAUAAAUAUAAACAC
..((((((.........((((((..(.....)..))))))..((.........)).....-----..))))))........................ ( -14.70)
>DroEre_CAF1 46381 88 - 1
AAAUCUGCAUAUUUCACGCUGUUUUGAGCCUCCGGACAGCUCGUUAACCUUAUGCCUAAA-----AUGCAGAUACAGAU----AUAAAUAUAAACAC
..((((((((.......((((((..(.....)..)))))).(((.......)))......-----))))))))......----.............. ( -17.70)
>DroYak_CAF1 45237 88 - 1
AAAUCUGCUCAUUUCACGCUGUUUUGAGCCUCCAGACAGCUCGUUAACCUUAUACCUAAA-----AUGCAGAUGCAGAU----AUAAAUAUCAGCAC
..((((((.........(((((((.(.....).)))))))..((.........)).....-----..))))))((.(((----(....)))).)).. ( -18.00)
>consensus
AAAUCUGCUCAUUUCACGCUGUUUUGAGCCUCCAGACAGCUCGUUAACCUUAUACCUAAA_____AUGCAGAUACAGAU____AUAAAUAUAAACAC
..((((((.........(((((((.(.....).)))))))..((.........))............))))))........................ (-11.44 = -11.58 +   0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:27 2006