Locus 3405

Sequence ID 3L_DroMel_CAF1
Location 9,985,955 – 9,986,053
Length 98
Max. P 0.807342
window5324

overview

Window 4

Location 9,985,955 – 9,986,053
Length 98
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 83.17
Mean single sequence MFE -35.17
Consensus MFE -22.17
Energy contribution -21.73
Covariance contribution -0.44
Combinations/Pair 1.22
Mean z-score -3.10
Structure conservation index 0.63
SVM decision value 0.64
SVM RNA-class probability 0.807342
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9985955 98 - 23771897
-------CUGUCAGAAAAAUCU------GACGCCGUCGCGUCUGGCUGUGCGGCACUUUCAAAUUUAUGGUUCAUUGAAUCCGCAUGAAAAACAGCCAGCCAGACAGACAG
-------..((((((....)))------)))...(((..((((((((((((((....(((((............))))).)))))((.....))..))))))))).))).. ( -35.90)
>DroPse_CAF1 42383 105 - 1
CUUUACGCUGUCAGAU--GUCUGACGGUGACGCCGUCGAGUCUGGCUGUGCGGCACUUUCAAAUUUAUGGUUCAUUGAAUUCGCAUGAAAAACAGUCA----GACAGAUCG
.....(((((((((..--..))))))))).....(((..((((((((((.((((...(((((............)))))...)).))....)))))))----))).))).. ( -35.40)
>DroEre_CAF1 40942 94 - 1
-------CUGUCAGAAAAGUCU------GACGCCGUCGCGUCUGGCUGUGCGGCACUUUCAAAUUUAUGGUUCAUUGAAUUCGCAUGAAAAACAGCCA----GACAGACGG
-------..((((((....)))------))).(((((..((((((((((.((((...(((((............)))))...)).))....)))))))----))).))))) ( -38.60)
>DroYak_CAF1 39353 94 - 1
-------CUGUCAGAAAAGUCU------GACGCCGUCGCGUCUGGCUGUGCGGCACUUUCAAAUUUAUGGUUCAUUGAAUCCGCAUGAAAAACAGCCA----GACAGACAG
-------..((((((....)))------)))...(((..((((((((((((((....(((((............))))).)))).(....))))))))----))).))).. ( -36.70)
>DroAna_CAF1 37772 90 - 1
-------CUGUCAGCGGUCUCU------GUCGCCGUCGCGUCUGGUAGUGUGGCACUUUCAAAUUUAUGGUUCAUUGAAUCCACAUGAAAAACAGCCA--------GACAG
-------..((..(((((....------...))))).))(((((((.((((((....(((((............))))).))))))........))))--------))).. ( -24.00)
>DroPer_CAF1 42066 105 - 1
CUUUACGCUGUCAGAU--GUCUGACGGUGACGCCGUCGAGUCUGGCUGUGCGGCACUUUCAAAUUUAUGGUUCAUUGAAUUCGCAUGAAAAACAGUCA----GACAGAUGG
.....(((((((((..--..)))))))))...(((((..((((((((((.((((...(((((............)))))...)).))....)))))))----))).))))) ( -40.40)
>consensus
_______CUGUCAGAAAAGUCU______GACGCCGUCGCGUCUGGCUGUGCGGCACUUUCAAAUUUAUGGUUCAUUGAAUCCGCAUGAAAAACAGCCA____GACAGACAG
.......(((((................(((((....)))))(((((((((((....(((((............))))).)))).(....))))))))........))))) (-22.17 = -21.73 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:22 2006