Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 9,985,396 – 9,985,509 |
Length | 113 |
Max. P | 0.948215 |
Location | 9,985,396 – 9,985,509 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 89.74 |
Mean single sequence MFE | -22.82 |
Consensus MFE | -18.16 |
Energy contribution | -18.40 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.06 |
Mean z-score | -2.11 |
Structure conservation index | 0.80 |
SVM decision value | 1.38 |
SVM RNA-class probability | 0.948215 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9985396 113 + 23771897 UUUAUUUACUCACCAUCUGCUUGUCCAGAAA-----CCCACUUAUUUUGCCUUUAAGUGAGCUCCCCGGGCAAACAGCUACUCUAAACUUUUCACUUCGAACUAAACUGGAUAGCAUC .................((((.((((((...-----..((((((.........)))))).(((.....)))...................................)))))))))).. ( -21.50) >DroSec_CAF1 38108 118 + 1 UUUUUUUAUUCACCAUCAGCUUGUCCAGAAUUUUUGUCCACUUAUUCUGCCGUUAAGUGAGCUCCCCGGGCAAACAGCUACUCUGAACUUUCCACUUCCAUCUAAACUGGAUAGCAUC ..................(((.((((((.......(..((((((.........))))))..).....(((....(((.....))).....))).............)))))))))... ( -21.70) >DroSim_CAF1 47233 113 + 1 UUUAUUUAUUCACCAUCAGCUUGUCCAGAAA-----CCCACUUAUUCUGCCGUUAAGUGAGCUCCCCGGGCAAACAGCUACUCUAAACUUUCCAUUUCCAUCUAAACUGGAUAGCAUC ..................(((.((((((...-----..((((((.........)))))).(((.....)))...................................)))))))))... ( -21.10) >DroEre_CAF1 40387 113 + 1 UUUAUUUAUUCAGCUUCAGCUUGUCCAGAAA-----CCCACUUAUUCCGCCUUUAAGUGAGCUCCCGGGGCAAAAAGCUACUCUAAAGCUUCCACUUCCAUCUAAACUGGAUAGCAUC ..................(((.((((((...-----..((((((.........)))))).......((((....(((((.......)))))....)))).......)))))))))... ( -24.30) >DroYak_CAF1 38795 113 + 1 UUUAUUUAUUCAGCAUCAGCUUGUCCGGAAA-----CCCACUUAUUCUGCCUUUAAGUGAGCUUCCGGGGCAAACAGCUACUCUAAACUUUCCACUUCCAUCUAAACUGAAUAGGAUC ....(((((((((...........((((((.-----(.((((((.........)))))).).))))))(((.....)))...........................)))))))))... ( -25.50) >consensus UUUAUUUAUUCACCAUCAGCUUGUCCAGAAA_____CCCACUUAUUCUGCCUUUAAGUGAGCUCCCCGGGCAAACAGCUACUCUAAACUUUCCACUUCCAUCUAAACUGGAUAGCAUC ..................(((.((((((..........((((((.........)))))).(((.....)))...................................)))))))))... (-18.16 = -18.40 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:21 2006