| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 9,980,249 – 9,980,345 |
| Length | 96 |
| Max. P | 0.819244 |
| Location | 9,980,249 – 9,980,345 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 82.84 |
| Mean single sequence MFE | -31.83 |
| Consensus MFE | -19.71 |
| Energy contribution | -21.85 |
| Covariance contribution | 2.14 |
| Combinations/Pair | 1.18 |
| Mean z-score | -3.05 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.819244 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9980249 96 + 23771897 -GGGUCUGGCCAAUGGUCAAAUAUUUGCCAGCAAACUU-UUGGCUCUG-GCCAAGUCAUUGAACGUUAUUUGGCCUGGCCAG-AAACUCAAACACACAUU---- -(..((((((((..(((((((..((((....))))..)-))))))..(-(((((((.((.....)).)))))))))))))))-)..).............---- ( -36.30) >DroPse_CAF1 36843 89 + 1 GGCGUUUGGCCACUGGUCAAAUAUUUAC-AACAAACUU-UGCGUUCUG-GCCAAGUCAUUGAACGG---CUGGCAGGGCCAA-CAACUCAAACA--GA------ ...((((((((...))))))))......-.......((-((.(((.((-(((..((((........---.))))..))))).-.))).))))..--..------ ( -22.60) >DroGri_CAF1 32835 98 + 1 -GUGCGCGGUCGAUGGUCAAAUAUUUGC-AACAAACUUUUU-GGCCUGGGCCAAGUCAUUGAACGUUGUUUGGCU-GGCCAGCAAACUCAAACA--GAAACACA -.(((..((((...(((((((..((((.-..))))...)))-))))..(((((((.((........)))))))))-)))).)))..........--........ ( -26.70) >DroSec_CAF1 32994 95 + 1 -GGUUCUGGCCAAUGGUCAAAUAUUUGCUAGCAAACUUUUUGGCUCUG-GCCAAGUCAUUGAACGUUGUUUGGCCUGGCCAG-AAACUCAAACA--CAUG---- -..(((((((((..(((((((..((((....))))...)))))))..(-((((((.((........))))))))))))))))-)).........--....---- ( -34.50) >DroEre_CAF1 35226 93 + 1 -GGGUCUGGCCAAUGGUCAAAUAUUUGCCAGCAAACUU-UUGGCUCUG-GCCAAGUCAUUGAACGUUGU-UGGCCUGGCCAG-AAACUCAAACA--CAUA---- -(..((((((((..(((((((..((((....))))..)-))))))..(-(((((..((........)))-))))))))))))-)..).......--....---- ( -34.40) >DroYak_CAF1 33402 94 + 1 -GGGUCUGGCCAAUGGUCAAAUAUUUGCCAGCAAACUU-UUGGCUCUG-GCCAAGUCAUUGAACGUUGUUUGGCCUGGCCAG-CAACUCAAAUA--CAUA---- -(((((((((((..(((((((..((((....))))..)-))))))..(-((((((.((........))))))))))))))))-..)))).....--....---- ( -36.50) >consensus _GGGUCUGGCCAAUGGUCAAAUAUUUGCCAGCAAACUU_UUGGCUCUG_GCCAAGUCAUUGAACGUUGUUUGGCCUGGCCAG_AAACUCAAACA__CAUA____ .((((((((((...(((((((((((((....))))....(((((.....)))))............))))))))).))))))...))))............... (-19.71 = -21.85 + 2.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:17 2006