Locus 34

Sequence ID 3L_DroMel_CAF1
Location 119,398 – 119,491
Length 93
Max. P 0.919566
window41

overview

Window 1

Location 119,398 – 119,491
Length 93
Sequences 5
Columns 99
Reading direction reverse
Mean pairwise identity 86.40
Mean single sequence MFE -26.84
Consensus MFE -18.34
Energy contribution -17.46
Covariance contribution -0.88
Combinations/Pair 1.27
Mean z-score -2.74
Structure conservation index 0.68
SVM decision value 1.13
SVM RNA-class probability 0.919566
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 119398 93 - 23771897
AGAAAAGCAGA--GAUUGUGUUAGCGUCGAAGCAAAAACAUGUUGCAAACGGACAAUGUUCAGUGUUUUAA-GAACAACUUGAAACAUACUCUAUU---
(((...((((.--...(((.((.((......)).)).)))..))))....((((...)))).(((((((((-(.....))))))))))..)))...--- ( -18.20)
>DroSec_CAF1 54860 96 - 1
AGAAAAGCAGA--GAUUGUAUUAGCGUCGCAGCAAAAACAUGUUGCCAACGGGCAAUGGGUAGUGUUUUAA-GAACAACUUGAAACACACUCUAUUUUC
.(((((..(((--((((((.....(((.((((((......))))))..))).))))).....(((((((((-(.....)))))))))).)))).))))) ( -28.60)
>DroSim_CAF1 60767 96 - 1
AGAAAAGCAGA--GAUUGUAUUAGCGUCGCAGCAAAAACAUGUUGCCAACGGGCAAUGGGUAGUGUUUUAA-GAACAACUUGAAACACACUCUAUUUUC
.(((((..(((--((((((.....(((.((((((......))))))..))).))))).....(((((((((-(.....)))))))))).)))).))))) ( -28.60)
>DroEre_CAF1 77548 99 - 1
AGAAAAGCAGAAAGGUUGCGUUAGCGUCGAAGCAGAAACAUGUUGCCAACGGGCAACGAGCUGUGCUUUAGGAAACUACUUGAAGCACACUCUAUUUGG
......((((.....))))....((......))........((((((....))))))(((.(((((((((((......))))))))))))))....... ( -32.10)
>DroYak_CAF1 72694 98 - 1
AGAAAAGCAGAGAGAUUGCGUUAGCGUCGAAGCAGAAACAUGUUGCCAACGGGCAACGAGCUGUGUUUUAA-AAACAACUUAAAACACACUCUAUUUGG
.............(((.((....)))))....((((.....((((((....))))))(((.((((((((((-.......)))))))))))))..)))). ( -26.70)
>consensus
AGAAAAGCAGA__GAUUGUGUUAGCGUCGAAGCAAAAACAUGUUGCCAACGGGCAAUGAGCAGUGUUUUAA_GAACAACUUGAAACACACUCUAUUUGC
......((((.....))))....((......)).......(((((((....)))))))....(((((((((........)))))))))........... (-18.34 = -17.46 +  -0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:22 2006