Locus 3398

Sequence ID 3L_DroMel_CAF1
Location 9,972,521 – 9,972,618
Length 97
Max. P 0.540897
window5315

overview

Window 5

Location 9,972,521 – 9,972,618
Length 97
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 82.08
Mean single sequence MFE -31.05
Consensus MFE -18.56
Energy contribution -20.17
Covariance contribution 1.61
Combinations/Pair 1.14
Mean z-score -1.95
Structure conservation index 0.60
SVM decision value 0.01
SVM RNA-class probability 0.540897
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9972521 97 - 23771897
UAAUCAGGC-----GAACA-CUUCCACUCGAUUCGGGCCAAAGUCUGCCACGCCUUUUUGGCCAGCAGCAAUGAAAGGCACUUAGUCGGGCGGAGUCUGAAUG
...((((((-----.....-..(((.(((((((.(((((...((((((...(((.....)))..))))..))....))).)).))))))).)))))))))... ( -33.41)
>DroVir_CAF1 26681 86 - 1
UAACAAACU-----GAACU-CUUU---GCAGUGCGCUGCAAAGUAUGCUACGACUU-UUGGCCA---GCACUGAAAGCCACU----CAAGCGCAACUUGAAUG
.........-----.....-((((---.((((((((((.(((((........))))-)))))..---)))))))))).((.(----((((.....))))).)) ( -19.60)
>DroSec_CAF1 25268 99 - 1
UAAUCAGUUCGCCUGAUUACCUUCCACUCGAUUCGGGCCAAAGACUGCCACGACUU-UUGGCCA---GCAAUGAAAGGCACUUAGUCGGGCGGAGUCUGAAUG
...((((((((((((((((....((..(((.....((((((((...........))-)))))).---....)))..))....))))))))))))..))))... ( -33.50)
>DroSim_CAF1 32882 93 - 1
UAAUCAGGC-----GAACA-CUUCCACUCGAUUCGGGCCAAAGUCUGCCACGACUU-UUGGCCA---GCAAUGAAAGGCACUUAGUCGGGCGGAGUCUGAAUG
...((((((-----.....-..(((.(((((((..((((((((((......))).)-)))))).---((........))....))))))).)))))))))... ( -33.41)
>DroEre_CAF1 25530 93 - 1
UAAUCAGGC-----GAACU-CUUCCACUCGAUUCGGGCCAAAGUCUGGCACGACUU-UUGGCCA---ACAAUGAAAGGCAUUUAGUCGGGCGGAGUCUGAAUG
...((((((-----(....-).(((.(((((((..((((((((((......))).)-)))))).---..((((.....)))).))))))).)))))))))... ( -32.90)
>DroYak_CAF1 25397 93 - 1
UAAUCAGGC-----GAACA-CUUCGACUCGAUUUGGGCCAAAGUCUGCCACGACUU-UUGGCCA---GCAAUGAAAGGCACUUAGUCGGGCGGAGUCUGAAUG
...((((((-----(..((-..(((...)))..))..).....((((((.(((((.-...(((.---.........)))....)))))))))))))))))... ( -33.50)
>consensus
UAAUCAGGC_____GAACA_CUUCCACUCGAUUCGGGCCAAAGUCUGCCACGACUU_UUGGCCA___GCAAUGAAAGGCACUUAGUCGGGCGGAGUCUGAAUG
..............................((((((((.....((((((.(((((.....(((.............)))....))))))))))))))))))). (-18.56 = -20.17 +   1.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:13 2006