Locus 3396

Sequence ID 3L_DroMel_CAF1
Location 9,968,975 – 9,969,072
Length 97
Max. P 0.861722
window5312

overview

Window 2

Location 9,968,975 – 9,969,072
Length 97
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 79.55
Mean single sequence MFE -23.72
Consensus MFE -17.14
Energy contribution -16.83
Covariance contribution -0.30
Combinations/Pair 1.21
Mean z-score -1.71
Structure conservation index 0.72
SVM decision value 0.83
SVM RNA-class probability 0.861722
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9968975 97 + 23771897
ACUCAUUCAGACGAUUCAAAGGCGUUGGCUUAAUUGCAUUUCGUAGCAGCUUUGUGUCGGCUUUAAGUCAACCCAACCAUUCU-CCCCUAUCUUGAUU
....................((.((((((((((.(((........)))(((.......))).)))))))))))).........-.............. ( -17.80)
>DroPse_CAF1 22476 77 + 1
--------------CUCGGAGGCGUUGGCUUAAUUGCAUUUCACAGCAGCUUUGUGUCGGCUUUAAGUCAACCAGGC-------CCCCAAUGUUGAUU
--------------...((.(((((((((((((..((....(((((.....)))))...)).))))))))))...))-------).)).......... ( -25.00)
>DroSec_CAF1 21825 97 + 1
ACUCAUUCAGACGAUUCGAAGGCGUUGGCUUAAUUGCAUUUCAUAGCAGCUUUGUGUCGGCUUUAAGUCAACCCUACCAUGCU-UUCCUAUCUUGAUU
......((((..(((..((((((((((((((((..((....(((((.....)))))...)).))))))))))........)))-)))..))))))).. ( -23.50)
>DroEre_CAF1 22020 98 + 1
CCACAUUCAGUCGCUUCGAAGGCGUUGGCUUAAUUGCAUUUCAUAGCAGCUUUGUGUCGGCUUUAAGUCGACUCAACCCUGCGCCCUCUAUCUUGAUU
........(((((....((.(((....((......))........((((..(((.((((((.....)))))).)))..))))))).)).....))))) ( -27.40)
>DroYak_CAF1 21833 96 + 1
ACACAUUCAGGCGGUUCGAAGGCGUUGGCUUAAUUGCAUUUCAUAGCAGCUUUGUGUCGGCUUUAAGUCAACCCAACCAUUC--CCCCUAUCUUGAUU
........(((.((...(..((.((((((((((..((....(((((.....)))))...)).))))))))))))..)....)--).)))......... ( -23.60)
>DroPer_CAF1 22049 77 + 1
--------------CUCGGAGGCGUUGGCUUAAUUGCAUUUCACAGCAGCUUUGUGUCGGCUUUAAGUCAACCAGGC-------CCCCAAUGUUGAUU
--------------...((.(((((((((((((..((....(((((.....)))))...)).))))))))))...))-------).)).......... ( -25.00)
>consensus
AC_CAUUCAG_CG_UUCGAAGGCGUUGGCUUAAUUGCAUUUCAUAGCAGCUUUGUGUCGGCUUUAAGUCAACCCAACCAU_C__CCCCUAUCUUGAUU
....................((.((((((((((..((....(((((.....)))))...)).))))))))))))........................ (-17.14 = -16.83 +  -0.30)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:10 2006