Locus 3394

Sequence ID 3L_DroMel_CAF1
Location 9,958,313 – 9,958,419
Length 106
Max. P 0.983692
window5306

overview

Window 6

Location 9,958,313 – 9,958,419
Length 106
Sequences 5
Columns 109
Reading direction reverse
Mean pairwise identity 92.91
Mean single sequence MFE -34.28
Consensus MFE -27.44
Energy contribution -27.72
Covariance contribution 0.28
Combinations/Pair 1.07
Mean z-score -2.47
Structure conservation index 0.80
SVM decision value 1.95
SVM RNA-class probability 0.983692
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9958313 106 - 23771897
AUUUUCGCGCUGCAAUUGACGCCU--GCAUACAUCACGCAUACGCCGUGUGCAACUUGCGGGUUAAUUGCGGCAGC-AUAAACGAUUCAGCGCCUAUGAAUGUUCCAUA
......((((((((((((..((((--(((.....(((((.......))))).....))))))))))))))))).))-...(((.(((((.......))))))))..... ( -35.60)
>DroSec_CAF1 11213 106 - 1
AUUUUCGCGCUGCAAUUGACGCCU--GCAUACAUCACGCAUACGCCGUGUGCAACUUGCGGGUUAAUUGCGGCAGC-AUAAACGAUUCAGCGCCUAUGAAUGUUCCAUA
......((((((((((((..((((--(((.....(((((.......))))).....))))))))))))))))).))-...(((.(((((.......))))))))..... ( -35.60)
>DroEre_CAF1 11341 106 - 1
AUUUUCGCGCUGCAAUUGACGCCU--GCAUACAUCACGCAUACGCCGUGUGCAACUUGCGGGUUAAUUGCGGCAGC-AUAAACGAUUCAGCGCCUAUGAAUGUUCCAUA
......((((((((((((..((((--(((.....(((((.......))))).....))))))))))))))))).))-...(((.(((((.......))))))))..... ( -35.60)
>DroYak_CAF1 11214 106 - 1
AUUUUCGCGCUGCAAUUGACGCCU--GCAUACAUCACGCAUACGCCGUGUGCAACUUGCGGGUUAAUUGCGGCAGC-AUAAACGAUUCAGCGCCUAUGAAUGUUCCAUA
......((((((((((((..((((--(((.....(((((.......))))).....))))))))))))))))).))-...(((.(((((.......))))))))..... ( -35.60)
>DroAna_CAF1 12154 108 - 1
AUUUUCGCACUGCAAUUGACGCCUCAGCAUGCAUCACGUAUACGCCGUGUGCACCACGCGGGUUAAUUGCGGGAAUUUUCAACGAUUUAGCA-CUAUGAAUGUCCUAUA
......((.(((((((((((((....))((((.....))))...(((((((...))))))))))))))))))(((((......))))).)).-................ ( -29.00)
>consensus
AUUUUCGCGCUGCAAUUGACGCCU__GCAUACAUCACGCAUACGCCGUGUGCAACUUGCGGGUUAAUUGCGGCAGC_AUAAACGAUUCAGCGCCUAUGAAUGUUCCAUA
........((((((((((((.((...(((.....(((((.......))))).....))))))))))))))))).......(((.(((((.......))))))))..... (-27.44 = -27.72 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:04 2006