| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 9,955,237 – 9,955,336 |
| Length | 99 |
| Max. P | 0.893436 |
| Location | 9,955,237 – 9,955,336 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 74.33 |
| Mean single sequence MFE | -18.75 |
| Consensus MFE | -10.48 |
| Energy contribution | -12.14 |
| Covariance contribution | 1.67 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.98 |
| SVM RNA-class probability | 0.893436 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9955237 99 - 23771897 UUUUUUUUAAUUGAAAGCUUA----------UCCAGACUAGUCAAACUCUUGCUUUAGCUGAUUACAGGGUAUUAAUACCCUUAAACAGCACACAUGCUGAAAUAUAUA ....(((((..(((((((...----------....((....))........))))).((((.(((.((((((....))))))))).))))...))...)))))...... ( -18.56) >DroSec_CAF1 8223 96 - 1 UUUCCUUUAAUUGAAAGCUUA----------UCCCGACUAGUCAAAC---UGCUUCAGCUGAUCACAGGGUAUUAAUACCCUUAAACAGCACAAAUGCUGAAAUAAAUA ......(((.(((((.((...----------....((....))....---.))))))).)))....((((((....))))))....(((((....)))))......... ( -16.50) >DroSim_CAF1 15127 99 - 1 UUUCCUUGAAUUGAAAGCUUA----------UCCAGACUAGUCAAACUCCUGCUUUAGCUGAUUACAGGGUAUUAAUACCCUUAAACAGCACACAUGCUGAAAUAUAUA ((((.........(((((...----------....((....))........))))).((((.(((.((((((....))))))))).)))).........))))...... ( -18.56) >DroEre_CAF1 8330 84 - 1 UU---UUUAAUUGAAGGCUUA--------------------UCAAACUCCGGCCUUAGCUGAUUACAGGGUAUUAAUACCCUUAAACAGCACACAUGGUGAAAUAUA-- .(---((((..((((((((..--------------------.........)))))).((((.(((.((((((....))))))))).))))...))...)))))....-- ( -22.10) >DroYak_CAF1 7958 95 - 1 UU--CUUUAACUGAAAGCUUA----------UCCGGGAUAAUCAAGCUCUGGCUUUAGCUGAUUACAGGGUAUUAAUACCCUUGAACAGCACACAUGCUGAAAUAUA-- ..--...........((((..----------.((((..(......)..))))....))))..(((.((((((....))))))))).(((((....))))).......-- ( -20.90) >DroAna_CAF1 9506 97 - 1 U---UUUUAAUUAAAAUUUCAGACUCUUCAAGCUGGAUCAGCCAGACACCUCCUUCAGCCGCGUACAGGGUAUUAAUGCCC---------AAACAUACAGAAAUAUAUA .---...........(((((...........((((((..((........))..))))))........(((((....)))))---------.........)))))..... ( -15.90) >consensus UU__CUUUAAUUGAAAGCUUA__________UCCAGACUAGUCAAACUCCUGCUUUAGCUGAUUACAGGGUAUUAAUACCCUUAAACAGCACACAUGCUGAAAUAUAUA .............(((((.................................))))).((((.(((.((((((....))))))))).))))................... (-10.48 = -12.14 + 1.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:02 2006