Locus 339

Sequence ID 3L_DroMel_CAF1
Location 966,655 – 966,748
Length 93
Max. P 0.683198
window505

overview

Window 5

Location 966,655 – 966,748
Length 93
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 75.81
Mean single sequence MFE -30.42
Consensus MFE -10.76
Energy contribution -10.89
Covariance contribution 0.13
Combinations/Pair 1.47
Mean z-score -2.31
Structure conservation index 0.35
SVM decision value 0.31
SVM RNA-class probability 0.683198
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 966655 93 - 23771897
GAGUGUUU-UGUG-GGGCGAAAGCCUGCCAAGUCGAGAAUAGCACU--AAUUAGGGGCGGGACAGUUGCGCAAG-GGGCUGG---CCGGGAUAUUUGAAAU
.(((((((-((..-((((....))))..))).........))))))--.........(((..(((((.(....)-.))))).---)))............. ( -29.10)
>DroVir_CAF1 11186 90 - 1
--GUGUUUGUACGGGGCCAAAAGCCUGGCAAGUCGAGAAUAGCUUUUAAAUGAGGGGCGAGACAAUUGCCCAAAUAAGCUGG---UA------CUUGAACU
--...(((((...((((.....)))).)))))(((((..((((((.........((((((.....))))))....)))))).---..------)))))... ( -26.92)
>DroGri_CAF1 9951 93 - 1
--GUGUUUAAAUGGGG-CAAAAGCCUGCCAAGUCGAGAAUAGCUUUUAAAUGAGGGGCGAGACAAUUGCCUAAAUGAGCUGCCAACCA-----CUUAAACA
--.(((((((.(((((-((......))))..........((((((.........((((((.....))))))....))))))....)))-----.))))))) ( -26.82)
>DroSec_CAF1 9025 93 - 1
GAGUGUUU-UGUG-GGGCGAAAGCCUGCCAAGUCGAGAAUAGCUCU--AAUUAGGGGCGGGACAGUUGCGCAAG-GGGCUGG---CCAGGAUAUUUGAAAU
((((((((-((..-((((....))))(((..(((.......(((((--.....)))))..)))((((.(....)-.))))))---)))))))))))..... ( -33.20)
>DroSim_CAF1 9109 93 - 1
GAGUGUUU-UGUG-GGGCGAAAGCCUGCCAAGUCGAGAAUAGCUCU--AAUUAGGGGCGGGACAGUUGCGCAAG-GGGCUGG---CCAGGAUAUUUGAAAU
((((((((-((..-((((....))))(((..(((.......(((((--.....)))))..)))((((.(....)-.))))))---)))))))))))..... ( -33.20)
>DroAna_CAF1 10457 94 - 1
GAGUGUCU-UGUG-GGGCAAAAGCCUGCCAAGUCGAGAAUAGCAGA--GUUCAGGGGUGGGACAGUUGCACAGGUGGGCUGA---CCUUGACACUCACAUC
(((((((.-...(-((.....((((..((.......((((......--))))....(((.((...)).))).))..))))..---))).)))))))..... ( -33.30)
>consensus
GAGUGUUU_UGUG_GGGCAAAAGCCUGCCAAGUCGAGAAUAGCUCU__AAUUAGGGGCGGGACAGUUGCGCAAG_GGGCUGG___CCAGGAUACUUGAAAU
....((((((....(.((((...((((((..........................))))))....)))).)..))))))...................... (-10.76 = -10.89 +   0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:35 2006