Locus 3387

Sequence ID 3L_DroMel_CAF1
Location 9,918,226 – 9,918,317
Length 91
Max. P 0.816138
window5295

overview

Window 5

Location 9,918,226 – 9,918,317
Length 91
Sequences 6
Columns 91
Reading direction forward
Mean pairwise identity 88.12
Mean single sequence MFE -22.92
Consensus MFE -18.97
Energy contribution -20.82
Covariance contribution 1.85
Combinations/Pair 1.14
Mean z-score -2.26
Structure conservation index 0.83
SVM decision value 0.66
SVM RNA-class probability 0.816138
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9918226 91 + 23771897
UUGGGGGUUAAUGAGUGUAUAAAUUGAGCACAAAAGCCAGGCCGAGGCAAUAAGCGCAUUAAUUGCCAGUGCUGAAAAGUACCUGGAUAAA
.(((.((((((((.((.(((...(((.((......)))))((....)).))).)).)))))))).)))(((((....)))))......... ( -25.10)
>DroSec_CAF1 70143 90 + 1
UUGGGGGUUAAUGAGUGUAUAAAUUGAGCACAAAAGCCAGGCC-AGGCAAUAAGCGCAUUAAUUGCCAGUGCUGAAAAGUACCUGGAUAAA
.(((.((((((((.((((.........))))....(((.....-.)))........)))))))).)))(((((....)))))......... ( -25.40)
>DroSim_CAF1 73496 90 + 1
UUGGGGGUUAAUGAGUGUAUAAAUUGAGCACAAAAGCCAGGCC-AGGCAAUAAGCGCAUUAAUUGCCAGUGCUGAAAAGUACCUGGAUAAA
.(((.((((((((.((((.........))))....(((.....-.)))........)))))))).)))(((((....)))))......... ( -25.40)
>DroEre_CAF1 72568 90 + 1
UUGGGGGUUAAUGAGUGUAUAAAUUGAGCACAAAAGCCGGGCC-AGGCAAUAAGCGCAUUAAUUGCCAGUGCUGAAAGGUACCUGGAUAAA
.(((.((((((((.((((.........))))....(((.....-.)))........)))))))).)))(((((....)))))......... ( -26.00)
>DroYak_CAF1 73041 90 + 1
UUGGGGGUUAAUGAGUGUAUAAAUUGAGCACAAAAGCCAGGCC-AAGCAAUAAGCGCAUUAAUUGCCAGUGCUGAAAAGUACCGGGAUAAA
.(((.((((((((.((.(((...(((.((.(........))))-))...))).)).)))))))).)))(((((....)))))......... ( -23.50)
>DroAna_CAF1 68973 71 + 1
UUCGAGCUUAAUGAGUGUAUAAAUUGAGCACAAAAGCCAAGCC-GAGCAGUAAGCGCAUUAAUUGCCAUUUC-------------------
.....(((((.((..((......(((.((......)))))..)-)..)).)))))(((.....)))......------------------- ( -12.10)
>consensus
UUGGGGGUUAAUGAGUGUAUAAAUUGAGCACAAAAGCCAGGCC_AGGCAAUAAGCGCAUUAAUUGCCAGUGCUGAAAAGUACCUGGAUAAA
.(((.((((((((.((.(((...(((.((......)))))((....)).))).)).)))))))).)))(((((....)))))......... (-18.97 = -20.82 +   1.85)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:54 2006