Locus 3386

Sequence ID 3L_DroMel_CAF1
Location 9,914,283 – 9,914,374
Length 91
Max. P 0.792139
window5294

overview

Window 4

Location 9,914,283 – 9,914,374
Length 91
Sequences 5
Columns 105
Reading direction forward
Mean pairwise identity 90.22
Mean single sequence MFE -31.63
Consensus MFE -22.88
Energy contribution -23.16
Covariance contribution 0.28
Combinations/Pair 1.08
Mean z-score -2.26
Structure conservation index 0.72
SVM decision value 0.59
SVM RNA-class probability 0.792139
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9914283 91 + 23771897
GGGUUCAUCUGCU-GCAGAGGCUUGGGGA-----GGUAAUUAGCAUU--------GCAGCAGGUGCAACCGCAGCAGUUGUCGUUAGACGGCAAGAAAUGCGAAU
.((((((((((((-((((..(((......-----.......))).))--------)))))))))).))))(((....((((((.....))))))....))).... ( -37.32)
>DroSec_CAF1 66218 92 + 1
GUGUUCAUCUGCAAGCGGAGGCUUGGGGA-----GGUAAUUAGCAUU--------GCAGCAGGUGCAACCGCAGCAGUUGUCGUUAGACGGCAAGAAAUGCGAAU
..((((.(((.(((((....))))).)))-----........(((((--------((.((.((.....)))).)).((((((....))))))....))))))))) ( -30.80)
>DroSim_CAF1 69519 92 + 1
GGGUUCAUCUGCGAGCAGAGGCUUGGGGA-----GGUAAUUAGCAUU--------GCAGCAGGUGCAACCGCAGCAGUUGUCGUUAGACGGCAAGAAAUGCGAAU
.(((((((((((..((((..(((......-----.......))).))--------)).))))))).))))(((....((((((.....))))))....))).... ( -32.12)
>DroEre_CAF1 68635 91 + 1
GGGUUCAUUUGA-AGCAGAGGCUUGGGGA-----GGUAAUUAGCAUU--------GCAGCAGGUGCAACCGCAGCAGUUGUCGUUGGACGGCAAGAAAUGUGAAU
.((((((((((.-.((((..(((......-----.......))).))--------))..)))))).))))(((....((((((.....))))))....))).... ( -24.42)
>DroYak_CAF1 68384 104 + 1
GGGUUCAUCUGA-AGCAGAUGCUUGGGGAGUGAAGGUAAUUAGCAUUGCAGCAUUGCAGCAGGUGCAACCGCAGCAGUUGUCGUUAGACGGCAAGAAAUGCGAAU
.((((((((((.-.((((.((((...(.((((...........)))).)))))))))..)))))).))))(((....((((((.....))))))....))).... ( -33.50)
>consensus
GGGUUCAUCUGC_AGCAGAGGCUUGGGGA_____GGUAAUUAGCAUU________GCAGCAGGUGCAACCGCAGCAGUUGUCGUUAGACGGCAAGAAAUGCGAAU
.(((((((((((..((....))....................((...........)).))))))).))))(((....((((((.....))))))....))).... (-22.88 = -23.16 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:53 2006