Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 9,898,921 – 9,899,021 |
Length | 100 |
Max. P | 0.876557 |
Location | 9,898,921 – 9,899,021 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 75.73 |
Mean single sequence MFE | -19.36 |
Consensus MFE | -9.02 |
Energy contribution | -13.74 |
Covariance contribution | 4.72 |
Combinations/Pair | 1.11 |
Mean z-score | -2.04 |
Structure conservation index | 0.47 |
SVM decision value | 0.90 |
SVM RNA-class probability | 0.876557 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9898921 100 + 23771897 GAUAAUUAGUGACAAUGUCUGAACUAUGGCUUAUAUUAAUUAUAUAUAGAUUAAGCUAUAAAUGCAUUGUUGCUGACAUGUUUUAACAAAUAGGCCAUCA (((..((((..(((((((.(....(((((((((.(((.((.....)).)))))))))))).).)))))))..))))..(((....)))........))). ( -22.20) >DroSec_CAF1 59479 100 + 1 GAUAAUUAGUGACAAUGUCUGAACUAUGGCUUAUAUUAAAUAUAUAUAGUUUAAGCUAUAAAGCCAUUGUUGCUGACAUAUUUAAACAAAUAGGCCAACA .....((((..((((((.((....(((((((((.((((........)))).))))))))).)).))))))..))))........................ ( -24.80) >DroSim_CAF1 61812 100 + 1 GAUAAUUAGUGACAAUGUUUGAACUAUGGCUUAUAUUAAUUAUAUAUAGUUUAAGCUAUAAAGCCUUUGUUGCUGAUAUGUUUAAACAAAUAGCCCAUCA (((.(((((..((((.((((....(((((((((.((((........)))).)))))))))))))..))))..))))).(((....)))........))). ( -22.80) >DroEre_CAF1 61682 85 + 1 GACAAUUAGUGACAAUGCCUGAACUAUGGCUUAUAUCAGUGCCAUAUAAUUUAAGCUACAAAGCUAU------UGACAUGGCUUAACAAUU--------- ........((......(((((...((((((..........)))))).......((((....))))..------...)).)))...))....--------- ( -15.30) >DroYak_CAF1 61244 84 + 1 GAUAAUUAGUGACAAUGUCUGAACUAU---------AAGUUCUACAUAAUUUAUGCUAUAUAGCUAU------UGACAUCGCUUAACAAUUU-GCCAUCA .......(((((...((((.((((...---------..))))............(((....)))...------.))))))))).........-....... ( -11.70) >consensus GAUAAUUAGUGACAAUGUCUGAACUAUGGCUUAUAUUAAUUAUAUAUAGUUUAAGCUAUAAAGCCAUUGUUGCUGACAUGUUUUAACAAAUAGGCCAUCA .....((((((((((((.((....(((((((((.((((........)))).))))))))).)).))))))))))))........................ ( -9.02 = -13.74 + 4.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:51 2006