Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 9,891,908 – 9,892,024 |
Length | 116 |
Max. P | 0.851773 |
Location | 9,891,908 – 9,892,024 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 91.06 |
Mean single sequence MFE | -29.60 |
Consensus MFE | -23.28 |
Energy contribution | -23.76 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.07 |
Mean z-score | -1.84 |
Structure conservation index | 0.79 |
SVM decision value | 0.79 |
SVM RNA-class probability | 0.851773 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9891908 116 + 23771897 GGAAGUGAGCGAGUGAGUUUGCUGCCACAACAAUAAGCAGCAAUAGAACAGCUACCAAGAAGAAUCGUUUACUUUGAAUCGCACAGAUAAAAUUACACUGCGAACUGUUGGGGUAU .(((((((((((((....(((((((...........)))))))....))..((....)).....)))))))))))...(((((...............)))))............. ( -26.36) >DroSec_CAF1 52590 109 + 1 GGAAGUGAGCGA----GUUUGCUGCCAC---AAUAAGCAGCAAUAGAACAGCUACCAAGAAGCAUCGUUUACUUUGAAUCGCACAGAUAAAAUUACACUGCGAAAUAUUGGGGUAU .(((((((((((----..(((((((...---.....))))))).......(((.......))).)))))))))))...(((((...............)))))............. ( -29.16) >DroSim_CAF1 54694 109 + 1 GGAAGUGAGCGA----GUUUGCUGCCAC---AAUAAGCAGCAAUAGAACAGCUACCAAGAAGCAUCGUUUACUUUGAAUCGCACAGAUAAAAUUACACUGCGAACUAUUGAGGUAU .(((((((((((----..(((((((...---.....))))))).......(((.......))).)))))))))))...(((((...............)))))............. ( -29.16) >DroEre_CAF1 54883 109 + 1 GGAAGUGAGCGA----GUUGGCAGCUGC---AAUAAGCAGCAAUAGAACAGCUACCAAAAAGCAUCGUUUACUUUGAAUCGCACAGAUAAAGAUACACUGCAAACUGUUGGGGUGU .(((((((((((----....((.(((((---.....)))))..(((.....))).......)).)))))))))))..(((.....)))......(((((.(((....))).))))) ( -32.00) >DroYak_CAF1 54233 109 + 1 GGAAGUGAGCGA----GUUUGCUGCCAC---AAUAAGCAGCCAUAGAACAGCUACCAAAGGGCAUCGUUUACUUUGAAUCGCACAGAUAAAGUUACACUGCGAACUGUUGGGGUGU .(((((((((((----(((((((((...---.....)))))....)))).(((.......))).)))))))))))..(((.....)))......(((((.(((....))).))))) ( -31.30) >consensus GGAAGUGAGCGA____GUUUGCUGCCAC___AAUAAGCAGCAAUAGAACAGCUACCAAGAAGCAUCGUUUACUUUGAAUCGCACAGAUAAAAUUACACUGCGAACUGUUGGGGUAU .(((((((((((......(((((((...........))))))).......(((.......))).)))))))))))..(((.....)))........(((.(((....))).))).. (-23.28 = -23.76 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:49 2006