Locus 3382

Sequence ID 3L_DroMel_CAF1
Location 9,889,428 – 9,889,553
Length 125
Max. P 0.820999
window5288 window5289

overview

Window 8

Location 9,889,428 – 9,889,535
Length 107
Sequences 3
Columns 107
Reading direction reverse
Mean pairwise identity 93.15
Mean single sequence MFE -11.87
Consensus MFE -10.96
Energy contribution -10.96
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.58
Structure conservation index 0.92
SVM decision value 0.04
SVM RNA-class probability 0.553889
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9889428 107 - 23771897
CUUGUUGAUAAAUUAGCUAUUCAAUUCAAUUAUUAACACUUUGAACUUCCCUUCAAUGCCAUCAAAUAUUAACUAAAGUAUUAUAUACUUUCCUUCAUUAUCAGCUU
...((((((((.............................(((((......)))))..................(((((((...)))))))......)))))))).. ( -11.60)
>DroSec_CAF1 50125 107 - 1
UUUGUUGAUAAAUUAACUAUUCAAUUAAAUUAUUAACACUUUGAACUACCCUGCAAUGCCAUCAAAUAUUCACCAAAGUAUUAGAUACUUUUCUUUAUUAUCAGCUU
...((((((((........(((((................)))))...............(((.((((((......)))))).)))...........)))))))).. ( -11.79)
>DroSim_CAF1 52231 107 - 1
UUUGUUGAUAAAUUAACUAUUCAAUUAAAUUAUUAGCACUUUGAACUACCCUGCAAUGCCAUCAAAUAUUAACCAAAGUAUUAGAUACUUUCCUUUAUUAUCAGCUU
...((((((((........................(((.............)))......(((.((((((......)))))).)))...........)))))))).. ( -12.22)
>consensus
UUUGUUGAUAAAUUAACUAUUCAAUUAAAUUAUUAACACUUUGAACUACCCUGCAAUGCCAUCAAAUAUUAACCAAAGUAUUAGAUACUUUCCUUUAUUAUCAGCUU
...((((((((........(((((................))))).............................(((((((...)))))))......)))))))).. (-10.96 = -10.96 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 9

Location 9,889,459 – 9,889,553
Length 94
Sequences 3
Columns 94
Reading direction reverse
Mean pairwise identity 94.33
Mean single sequence MFE -12.08
Consensus MFE -12.04
Energy contribution -11.60
Covariance contribution -0.44
Combinations/Pair 1.12
Mean z-score -1.64
Structure conservation index 1.00
SVM decision value 0.68
SVM RNA-class probability 0.820999
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9889459 94 - 23771897
GUGUUGAUAAUCAAUAACCUUGUUGAUAAAUUAGCUAUUCAAUUCAAUUAUUAACACUUUGAACUUCCCUUCAAUGCCAUCAAAUAUUAACUAA
(((((((((((..........(((((....)))))...........))))))))))).(((((......))))).................... ( -13.00)
>DroSec_CAF1 50156 94 - 1
GUGUUGAUAAUCAAUAACUUUGUUGAUAAAUUAACUAUUCAAUUAAAUUAUUAACACUUUGAACUACCCUGCAAUGCCAUCAAAUAUUCACCAA
(((((((((((..........(((((....)))))...........)))))))))))..................................... ( -11.60)
>DroSim_CAF1 52262 94 - 1
GUGUUGAUAAUCAAUAACUUUGUUGAUAAAUUAACUAUUCAAUUAAAUUAUUAGCACUUUGAACUACCCUGCAAUGCCAUCAAAUAUUAACCAA
(.(((((((...........(((((((((.((((........)))).))))))))).(((((.................))))))))))))).. ( -11.63)
>consensus
GUGUUGAUAAUCAAUAACUUUGUUGAUAAAUUAACUAUUCAAUUAAAUUAUUAACACUUUGAACUACCCUGCAAUGCCAUCAAAUAUUAACCAA
(((((((((((..........(((((....)))))...........)))))))))))..................................... (-12.04 = -11.60 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:47 2006