Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 965,445 – 965,565 |
Length | 120 |
Max. P | 0.780039 |
Location | 965,445 – 965,565 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 86.83 |
Mean single sequence MFE | -33.50 |
Consensus MFE | -27.74 |
Energy contribution | -27.42 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.36 |
Mean z-score | -2.12 |
Structure conservation index | 0.83 |
SVM decision value | 0.55 |
SVM RNA-class probability | 0.780039 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 965445 120 + 23771897 CAUAUCGACCAUGGAGCUGAUAUGCUCGCCCACCCUGCGCCCUCCGCUGAUCAUCGGCAUCGUGAUGCAGCUGAGCCAGCAAUUCAGCGGCAUCAACGCCGUCUUCUACUAUUCCACGUC ......(((..(((((((((..((((.((.((..(((((.((...((((.....))))...).).))))).)).)).))))..)))))(((......)))............)))).))) ( -36.80) >DroVir_CAF1 9819 120 + 1 UAUAUCGACCAUGGAGCUUAUUUGCUCGCCUACAUUGCGUCCGCCAUUGAUAAUUGGCAUCGUGAUGCAACUGAGCCAACAGUUUAGCGGCAUCAAUGCUGUCUUCUACUACUCCACAUC ...........(((((.......(((((....(((..((...((((........))))..))..)))....)))))....(((..(((((((....))))).))...))).))))).... ( -33.70) >DroGri_CAF1 8587 120 + 1 UAUAUCGACCAUGGAGCUCAUCUGUUCGCCCACAUUGCGUCCGCCACUAAUCAUUGGCAUUGUGAUGCAGCUGAGCCAACAGUUUAGCGGCAUCAAUGCCGUCUUCUACUAUUCCACAUC ...........(((((((...(((((.((.((..((((((((((((........))))...).))))))).)).)).)))))...)))((((....))))............)))).... ( -33.60) >DroWil_CAF1 11090 120 + 1 UAUAUCGACCAUGGAGCUAAUAUGCUCACCCACACUGCGUCCGCCAUUGAUCAUUGGCAUUGUGAUGCAGCUAAGUCAACAGUUUAGCGGUAUCAAUGCCGUUUUCUAUUACUCCACAUC ......(((....((((......)))).......((((((((((((........))))...).)))))))....)))...((...(((((((....)))))))..))............. ( -31.50) >DroMoj_CAF1 9631 120 + 1 UAUAUCGACCAUGGAGCUCAUUUGCUCGUCUACGUUGCGUCCGCCUCUGAUCAUUGGCAUCGUGAUGCAGCUGAGCCAACAGUUUAGCGGCAUCAAUGCCGUCUUCUACUACUCCACGUC ......(((..(((((.......(((((.((.(((..((...(((..........)))..))..))).)).)))))....(((..(((((((....))))).))...))).))))).))) ( -37.90) >DroPer_CAF1 10066 120 + 1 UAUCUCCACCAUGGAGCUCAUCUGUUCGCCCACCCUGCGUCCCCCAUUGAUCAUUGGCAUUGUAAUGCAGCUGAGUCAGCAAUUCAGUGGCAUCAACGCCGUCUUCUACUACUCCACAUC ...........(((((.......(..(((.......)))..)......((....((((.(((..((((.(((((((.....))))))).))))))).))))...)).....))))).... ( -27.50) >consensus UAUAUCGACCAUGGAGCUCAUAUGCUCGCCCACACUGCGUCCGCCACUGAUCAUUGGCAUCGUGAUGCAGCUGAGCCAACAGUUUAGCGGCAUCAAUGCCGUCUUCUACUACUCCACAUC ......(((....((((......)))).........((((..((((........))))....((((((.(((((((.....))))))).)))))))))).)))................. (-27.74 = -27.42 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:34 2006