Locus 338

Sequence ID 3L_DroMel_CAF1
Location 965,445 – 965,565
Length 120
Max. P 0.780039
window504

overview

Window 4

Location 965,445 – 965,565
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 86.83
Mean single sequence MFE -33.50
Consensus MFE -27.74
Energy contribution -27.42
Covariance contribution -0.33
Combinations/Pair 1.36
Mean z-score -2.12
Structure conservation index 0.83
SVM decision value 0.55
SVM RNA-class probability 0.780039
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 965445 120 + 23771897
CAUAUCGACCAUGGAGCUGAUAUGCUCGCCCACCCUGCGCCCUCCGCUGAUCAUCGGCAUCGUGAUGCAGCUGAGCCAGCAAUUCAGCGGCAUCAACGCCGUCUUCUACUAUUCCACGUC
......(((..(((((((((..((((.((.((..(((((.((...((((.....))))...).).))))).)).)).))))..)))))(((......)))............)))).))) ( -36.80)
>DroVir_CAF1 9819 120 + 1
UAUAUCGACCAUGGAGCUUAUUUGCUCGCCUACAUUGCGUCCGCCAUUGAUAAUUGGCAUCGUGAUGCAACUGAGCCAACAGUUUAGCGGCAUCAAUGCUGUCUUCUACUACUCCACAUC
...........(((((.......(((((....(((..((...((((........))))..))..)))....)))))....(((..(((((((....))))).))...))).))))).... ( -33.70)
>DroGri_CAF1 8587 120 + 1
UAUAUCGACCAUGGAGCUCAUCUGUUCGCCCACAUUGCGUCCGCCACUAAUCAUUGGCAUUGUGAUGCAGCUGAGCCAACAGUUUAGCGGCAUCAAUGCCGUCUUCUACUAUUCCACAUC
...........(((((((...(((((.((.((..((((((((((((........))))...).))))))).)).)).)))))...)))((((....))))............)))).... ( -33.60)
>DroWil_CAF1 11090 120 + 1
UAUAUCGACCAUGGAGCUAAUAUGCUCACCCACACUGCGUCCGCCAUUGAUCAUUGGCAUUGUGAUGCAGCUAAGUCAACAGUUUAGCGGUAUCAAUGCCGUUUUCUAUUACUCCACAUC
......(((....((((......)))).......((((((((((((........))))...).)))))))....)))...((...(((((((....)))))))..))............. ( -31.50)
>DroMoj_CAF1 9631 120 + 1
UAUAUCGACCAUGGAGCUCAUUUGCUCGUCUACGUUGCGUCCGCCUCUGAUCAUUGGCAUCGUGAUGCAGCUGAGCCAACAGUUUAGCGGCAUCAAUGCCGUCUUCUACUACUCCACGUC
......(((..(((((.......(((((.((.(((..((...(((..........)))..))..))).)).)))))....(((..(((((((....))))).))...))).))))).))) ( -37.90)
>DroPer_CAF1 10066 120 + 1
UAUCUCCACCAUGGAGCUCAUCUGUUCGCCCACCCUGCGUCCCCCAUUGAUCAUUGGCAUUGUAAUGCAGCUGAGUCAGCAAUUCAGUGGCAUCAACGCCGUCUUCUACUACUCCACAUC
...........(((((.......(..(((.......)))..)......((....((((.(((..((((.(((((((.....))))))).))))))).))))...)).....))))).... ( -27.50)
>consensus
UAUAUCGACCAUGGAGCUCAUAUGCUCGCCCACACUGCGUCCGCCACUGAUCAUUGGCAUCGUGAUGCAGCUGAGCCAACAGUUUAGCGGCAUCAAUGCCGUCUUCUACUACUCCACAUC
......(((....((((......)))).........((((..((((........))))....((((((.(((((((.....))))))).)))))))))).)))................. (-27.74 = -27.42 +  -0.33) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:34 2006