Locus 3379

Sequence ID 3L_DroMel_CAF1
Location 9,884,893 – 9,885,000
Length 107
Max. P 0.500000
window5284

overview

Window 4

Location 9,884,893 – 9,885,000
Length 107
Sequences 6
Columns 116
Reading direction reverse
Mean pairwise identity 77.40
Mean single sequence MFE -25.11
Consensus MFE -11.09
Energy contribution -11.40
Covariance contribution 0.31
Combinations/Pair 1.19
Mean z-score -2.02
Structure conservation index 0.44
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9884893 107 - 23771897
CAGGUGGCAGCC-UCGCAAAUAUUUGCAUAUUUGAUAUUUAUGUACCAACAACUUUAUACAUCAUGUAGAGUUUCCAUAUCGAUUUUG-CCGCCAU----GCCA--CCGA-UGCUA
..(((((((...-..(((((....((((((.........)))))).....(((((((((.....)))))))))...........))))-).....)----))))--))..-..... ( -27.30)
>DroPse_CAF1 43352 93 - 1
CAGGUGGCAGCC-GGGUAAAUAUUUGCAUAUUUGAUAUUUAUGUAGCAACAACUUUAUACAUGAUGUAGAGUUUCCAUAUCGAUUUUG-U---------------------UGCCA
..((..(((((.-(.(((((((((.........))))))))).).))...(((((((((.....))))))))).............))-)---------------------..)). ( -23.10)
>DroGri_CAF1 45976 107 - 1
CAGGUAGCUGAC-GAGCAAAUAUUUGCAUAUUUGAUAUUUUCGUAACAACAAACUUAUACCGAAUGUAGA-UUUCGUUAUCGAUUUUUAUCAUAAUGUUG-------CGCUUGUUG
.........(((-(((((((((((.........)))))))..((((((........(((.((((......-.)))).))).(((....)))....)))))-------)))))))). ( -19.80)
>DroWil_CAF1 71796 105 - 1
CAGGUGGCAGCCGUGGUAAAUAUUUGCAUAUUUGAUAUUUAUGUACCAACAACUUUAUACACAAUGUAGA-UUUUCAUAUCGAUUUUG-GUGCUG------UUG--CUGU-UGCUU
.(((..(((((....(((((((((.........)))))))))(((((((........(((.....)))((-(......)))....)))-))))..------..)--))))-..))) ( -26.90)
>DroAna_CAF1 45468 110 - 1
CAGGUGGCAGCC-UGGUAAAUAUUUGCAUAUUUGAUAUUUAUGUAGCAACAACUUUAUACAUCAUGUAGCGUUUUCAUAUCGAUUUUG-CCACCGU--U-GCCGCUCUGU-UGCCA
..((..((((..-((((((......(((...(((((((..((((.(((................))).))))....)))))))...))-).....)--)-))))..))))-..)). ( -30.49)
>DroPer_CAF1 43934 93 - 1
CAGGUGGCAGCC-GGGUAAAUAUUUGCAUAUUUGAUAUUUAUGUAGCAACAACUUUAUACAUGAUGUAGAGUUUCCAUAUCGAUUUUG-U---------------------UGCCA
..((..(((((.-(.(((((((((.........))))))))).).))...(((((((((.....))))))))).............))-)---------------------..)). ( -23.10)
>consensus
CAGGUGGCAGCC_GGGUAAAUAUUUGCAUAUUUGAUAUUUAUGUAGCAACAACUUUAUACAUAAUGUAGAGUUUCCAUAUCGAUUUUG_UC_C_______________G__UGCCA
....(((((......((((....))))....(((((((....((....))(((((((((.....)))))))))...)))))))............................))))) (-11.09 = -11.40 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:43 2006