| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 9,881,492 – 9,881,588 |
| Length | 96 |
| Max. P | 0.999276 |
| Location | 9,881,492 – 9,881,588 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 75.71 |
| Mean single sequence MFE | -19.46 |
| Consensus MFE | -10.81 |
| Energy contribution | -11.56 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.13 |
| Mean z-score | -3.20 |
| Structure conservation index | 0.56 |
| SVM decision value | 3.48 |
| SVM RNA-class probability | 0.999276 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9881492 96 + 23771897 AACCACUAGUUGCCUUACUCAGUUCACUCGGCCCACUCGGCCCACUCGGCCCACCGGCCAUGACAAAAACAAAGGCAGCAGGAA---AAAAAAGAAAAC .....((.((((((((.............((((.....)))).....((((....))))............)))))))).))..---............ ( -27.10) >DroSec_CAF1 42271 86 + 1 AACCACUAGUUGCCUUCCUCAGUUCACUCGGCCCACUCGCCCC---------AC----CAUGACAAAAACAAAGGCAGCUGAGAAAAAAAAAAAAAAAC ......((((((((((.......(((...(((......)))..---------..----..)))........)))))))))).................. ( -15.66) >DroSim_CAF1 44344 89 + 1 AACCACUAGUUGCCUUCCUCAGUUCACUCGGCCCACUCGCCCC---------ACCGGCCAUGACAAAAACAAAGGCAGCUGAAAGA-AAAAAAAAAAAC ......((((((((((.......(((...((((..........---------...)))).)))........)))))))))).....-............ ( -18.78) >DroYak_CAF1 43727 73 + 1 AACCACUAGUUGCCCUCCUCAGUCCACACGGCUCACC---AC---------CACCGGCCAUGGCUGAAACAAAGGCAG-----A---AAAAAA------ .........(((((....((((.(((...((((....---..---------....)))).)))))))......)))))-----.---......------ ( -16.30) >consensus AACCACUAGUUGCCUUCCUCAGUUCACUCGGCCCACUCGCCCC_________ACCGGCCAUGACAAAAACAAAGGCAGCUGAAA___AAAAAAAAAAAC ........((((((((.......(((...((((......................)))).)))........)))))))).................... (-10.81 = -11.56 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:39 2006