| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 9,857,220 – 9,857,321 |
| Length | 101 |
| Max. P | 0.603280 |
| Location | 9,857,220 – 9,857,321 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 79.96 |
| Mean single sequence MFE | -28.55 |
| Consensus MFE | -16.33 |
| Energy contribution | -17.22 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.603280 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9857220 101 + 23771897 GCAGCCC------GCUCCGCAGCACCCACCACCACCCACCUCGCAUCCCGCGCUGAGGCAACCCAAGGCAUACCUGGCCAGUACGCCCAACUCCCUGCUGGAUGCCA .((((..------(((....)))...................((.....)))))).((((..(((.((....)))))((((((.(........).)))))).)))). ( -24.90) >DroVir_CAF1 15283 101 + 1 GCUACCG------CCACCACAGCAUCCGCCGCCGCCCACCUCGCAUCCGGCGCUGCGUCAGCCCAAGGCUUAUUUGGCCAGCACGCCCAAUUCGCUGCUGGAUGCCA .......------........((((((((((..((.......))...))))((((...))))....((((.....))))((((.((.......)))))))))))).. ( -30.50) >DroGri_CAF1 16422 107 + 1 UCUGCCACCACCACCACCACAGCAUCCACCAGCACCCAGCUCCCAUCCGGCGCUGCGUCAACCCAAGGCAUAUUUGGCCAGCACGCCCAACUCGCUGCUGGAUGCAA .....................(((((((.((((....(((.((.....)).)))(((((...(((((.....)))))...).)))).......)))).))))))).. ( -32.40) >DroWil_CAF1 39426 101 + 1 GUUGCCG------CCACCACAGCAUCCAGCACCGCCAACAUCCCAUCCAGCAUUGCGUCAACCGAAGGCAUAUUUGGCCAGUACACCCAACUCCCUGCUGGAUGCCA .......------........((((((((((..(((((...........((...))(((.......)))....))))).(((.......)))...)))))))))).. ( -24.90) >DroMoj_CAF1 15714 101 + 1 GCUGCCA------CCUCCACAGCAUCCACCGGCACCCACUUCGCACCCGGCACUGCGCCAGCCCAAGGCCUACUUGGCCAGCACUCCCAACUCUCUGCUGGAUGCCA ((((...------......)))).......((((.(((....(((...(((.....))).((....((((.....)))).)).............)))))).)))). ( -29.00) >DroAna_CAF1 17645 104 + 1 UCAGCCG---CCACAGCCUCAGCACCCACCACCGCCCACCUCGCAUCCGGCUCUGAGGCAGCCCAAGGCCUACUUGGCCAGCACUCCCAAUUCCCUGCUGGACGCCA ((((..(---((...((....))..........((.......))....))).))))(((...(((((.....)))))((((((............))))))..))). ( -29.60) >consensus GCUGCCG______CCACCACAGCAUCCACCACCACCCACCUCGCAUCCGGCGCUGCGUCAACCCAAGGCAUACUUGGCCAGCACGCCCAACUCCCUGCUGGAUGCCA ..........................................(((((((((..((.(....).)).(((.......))).................))))))))).. (-16.33 = -17.22 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:31 2006