Locus 3372

Sequence ID 3L_DroMel_CAF1
Location 9,852,602 – 9,852,694
Length 92
Max. P 0.522850
window5270

overview

Window 0

Location 9,852,602 – 9,852,694
Length 92
Sequences 5
Columns 116
Reading direction reverse
Mean pairwise identity 78.44
Mean single sequence MFE -19.52
Consensus MFE -12.40
Energy contribution -12.68
Covariance contribution 0.28
Combinations/Pair 1.10
Mean z-score -1.57
Structure conservation index 0.64
SVM decision value -0.02
SVM RNA-class probability 0.522850
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9852602 92 - 23771897
GUGCCGCCUCUACAGAGGGAAAAAGGUAUUCAUUAAGUGCUAAUAACAAGAGGUCCUAACAUCACUU--------------------UAAUAUCCCUCUUUCGAUA----UAACAU
.............(((((((....((((((.....))))))........(((((.........))))--------------------)....))))))).......----...... ( -14.60)
>DroSec_CAF1 13487 92 - 1
GUACCGCCUCUACAGAGGGAAAAAGGUAUUCAUUAAGAGCUAAUAAUGAGAGGUCCUAACUUUACUU--------------------UAAUAUACCUUUUUAGAUA----UAACAU
......((((....)))).((((((((((((((((........))))))(((((....)))))....--------------------....)))))))))).....----...... ( -19.10)
>DroSim_CAF1 13285 92 - 1
GUACCGCCUCUACAGAGGGAAAAAGGUAUUCAUUAAGAGCUAAUAAUGAGAGGUCCUAACUUCACUU--------------------UAAUAUACCUUUUUAGAUA----UAGCAU
((....((((....)))).((((((((((((((((........))))))(((((....)))))....--------------------....)))))))))).....----..)).. ( -21.70)
>DroEre_CAF1 14286 92 - 1
GUACCGCCUCUACAGAGGGGAAAAGGUAUUCAUUAAGACCUAAUAAUGAGAGGUCCUAACUUCACUU--------------------UAAUAAACACAUUUACAUA----UUUCGU
(((((.((((....))))))..(((((..((((((........))))))(((((....)))))))))--------------------)............)))...----...... ( -18.10)
>DroYak_CAF1 14503 115 - 1
GUACCGCCUCUACAGAGGGAAAAAGGUAUUCAUUA-GACUCAAUAAUGAGAGGUCCUAACUUCACUUACAUUCAUUUUUGUAUAAAUGAAUAAACAGAACUUAAUAAAAGUUUCGU
(((((.((((....))))......)))))((((((-.......))))))(((((....)))))......((((((((......))))))))..((..(((((.....)))))..)) ( -24.10)
>consensus
GUACCGCCUCUACAGAGGGAAAAAGGUAUUCAUUAAGAGCUAAUAAUGAGAGGUCCUAACUUCACUU____________________UAAUAUACCUAUUUAGAUA____UAACAU
(((((.((((....))))......)))))((((((........))))))(((((....)))))..................................................... (-12.40 = -12.68 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:30 2006