| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 965,118 – 965,238 |
| Length | 120 |
| Max. P | 0.573344 |
| Location | 965,118 – 965,238 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 84.22 |
| Mean single sequence MFE | -38.55 |
| Consensus MFE | -26.43 |
| Energy contribution | -27.23 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.31 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.573344 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 965118 120 + 23771897 UUUACUAUUAUCCCAAGUGCUGGGCAUCGAGCAAAUCCUCGGCACCAACGAGGGCUGGCCCAUCCUCCUGGGCCUGGCCAUCUGCCCGGCGAUCCUGCAGCUGAUCCUGCUGCCCGUCUG ..................(((((((((((((......))))).......((.((((((((((......)))))).)))).))))))))))(((...(((((.......)))))..))).. ( -49.20) >DroPse_CAF1 10231 120 + 1 UUUACUAUUAUCCCAGGUCCUGGGGAUCGAGCAGAUCCUCGGCACCAACGAGGGCUGGCCCAUACUCCUCGGCCUGGCCAUAUGUCCAGCAAUAUUGCAACUAAUUUUACUGCCCGUCUG ...............(((.(((((((((.....))))))))).)))...(((((((((((....(.....)....)))))........(((....))).............)))).)).. ( -37.00) >DroGri_CAF1 8249 120 + 1 UUUAUUAUUAUCCCAGGUGCUGGGAAUUGAACAAAUCUUAGGCACUAAUGACGGCUGGCCCAUACUCCUGGGUCUGGCCAUAUGUCCAGCAAUAUUGCAAUUAAUAUUACUGCCAGUUUG ..........((((((...))))))...............((((.(((((..(((..(((((......)))).)..))).........(((....)))......))))).))))...... ( -35.60) >DroWil_CAF1 10764 120 + 1 UUUAUUAUUAUCCCAGGUGCUGGGCAUUGAACAAAUCUUGGGCACCAAUGAGGGCUGGCCCAUACUGUUGGGUCUGGCCAUAUGUCCAGCAAUAUUGCAAUUAAUUUUACUGCCCGUUUG ...............((((((((((((........((((((...)))).)).(((..(((((......)))).)..)))..)))))))))).....(((...........)))))..... ( -36.10) >DroMoj_CAF1 9286 120 + 1 UUUACUAUUAUCCCAGGUGCUGGGCAUUGAACAAAUCUUAGGCACUAAUGAGGGCUGGCCCAUUCUGCUGGGCCUGGCCAUAUGUCCAGCAAUAUUGCAAUUAAUAUUACUGCCAGUUUG ...............((((((((((((.........((((........))))((((((((((......)))))).))))..)))))))))(((((((....)))))))...)))...... ( -39.60) >DroPer_CAF1 9621 120 + 1 UUUACUAUUAUCCCAGGUCCUGGGGAUCGAGCAGAUCCUCGGCACCAACGAGGGCUGGCCCAUACUCCUCGGCCUGGCCAUAUGUCCAGCAAUAUUGCAACUAAUUUNNNNNNNNNNNNN ...............(((.(((((((((.....))))))))).)))......((((((((..........)))).)))).........(((....)))...................... ( -33.80) >consensus UUUACUAUUAUCCCAGGUGCUGGGCAUCGAACAAAUCCUCGGCACCAACGAGGGCUGGCCCAUACUCCUGGGCCUGGCCAUAUGUCCAGCAAUAUUGCAACUAAUUUUACUGCCCGUUUG ...........(((((...)))))................((((........((((((((((......)))))).)))).........(((....)))............))))...... (-26.43 = -27.23 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:33 2006