Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 9,844,361 – 9,844,451 |
Length | 90 |
Max. P | 0.817722 |
Location | 9,844,361 – 9,844,451 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 78.71 |
Mean single sequence MFE | -35.30 |
Consensus MFE | -19.92 |
Energy contribution | -20.75 |
Covariance contribution | 0.83 |
Combinations/Pair | 1.00 |
Mean z-score | -2.03 |
Structure conservation index | 0.56 |
SVM decision value | 0.67 |
SVM RNA-class probability | 0.817722 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9844361 90 - 23771897 --------UA-UA---UUACUGUCGCUCGAGUGUCGCUCACUUGGAGUCGGCGGCUGCCGCAUUGCUGGCGGACUUAGUGGCAGCUUUAAUGGCGGCCGCCG --------..-..---........(((((((((.....))))).))))((((((((((((....((((.((.......)).)))).....)))))))))))) ( -40.60) >DroSec_CAF1 5331 79 - 1 --------UA-UA---UUACUGUC-----------GCUCACUUGGAGUCGGCGGCUGCCGCAUUGCUGGCGGACUUGGUGGCAGCUUUAAUGGCGGCCGCCG --------..-..---........-----------((((.....))))((((((((((((....((((.((.......)).)))).....)))))))))))) ( -35.20) >DroSim_CAF1 5215 79 - 1 --------UA-UA---UUACUGUC-----------GCUCACUUGGAGUCGGCGGCUGCCGCAUUGCUGGCGGACUUGGUGGCAGCUUUAAUGGCGGCCGCCG --------..-..---........-----------((((.....))))((((((((((((....((((.((.......)).)))).....)))))))))))) ( -35.20) >DroEre_CAF1 5424 87 - 1 --------UA-UA---UUACUGUCGCUCGGGUGUCGCUCACUUGCAGUCG---GCUGCCGCAUUGUUGGCGGACUUGGUGGCCGCUUUAAUGGCGGCCGCCG --------..-..---.....((((((((((((.....)))))).)).))---))..((((.......))))....((((((((((.....)))))))))). ( -40.00) >DroYak_CAF1 5380 87 - 1 --------CA-UA---UUACUGUCGCUCGAGUGUCGCUCACUUGCUGUCG---GCUGCCGCAUUGUUGGCGGACUUGGUGGCAGCUUUAAUGGCGGCCGCCG --------..-..---.....(((((.((((((.....))))))..).))---))..((((.......))))....((((((.(((.....))).)))))). ( -32.50) >DroPer_CAF1 4423 96 - 1 GUUACUAUUGUUAUUUUUGUUGGUGCUUGCUUCCAGCUUACUUGGAAUCG---GCUGCCGCAUUGCUA---GACUUGGUGGCAGCUUUGAUGGCCGCCGCCG .........(((.....(((.((((((.(.((((((.....)))))).))---)).))))))......---)))..((((((.(((.....))).)))))). ( -28.30) >consensus ________UA_UA___UUACUGUCGCUCG_GUGUCGCUCACUUGGAGUCG___GCUGCCGCAUUGCUGGCGGACUUGGUGGCAGCUUUAAUGGCGGCCGCCG ......................................................((((((......))))))....((((((.(((.....))).)))))). (-19.92 = -20.75 + 0.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:24 2006