| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 9,835,839 – 9,835,950 |
| Length | 111 |
| Max. P | 0.670307 |
| Location | 9,835,839 – 9,835,950 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 78.21 |
| Mean single sequence MFE | -34.56 |
| Consensus MFE | -19.22 |
| Energy contribution | -19.58 |
| Covariance contribution | 0.37 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.670307 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9835839 111 - 23771897 UAAAAGGCCAAAGUAUAAUGGAUGCCCUGCUUGGCAUGUUUACAACCAAAGUGAAUGCGGACGAGAUGAAGAAGGAGAACUCGUCGGAUAGUUUGGCCAGUGGC-U--CGCAAA .....(((((((.(((.....(((((......)))))((((((.......)))))).(.((((((..............)))))).)))).))))))).(((..-.--)))... ( -31.44) >DroEre_CAF1 9252 111 - 1 UAAAAGGCCAGAGUAUAAUGGAUGCCCUGCUCGGCAUGUUUACAACCAAAGUGAAUGCAGAUGAGAUGAAGAAGGACAACUCGUCGGAUAGUUUGGCCAGUGGU-U--CGGCAA .....(((((((.(((.....(((((......)))))((((((.......))))))...((((((.((........)).))))))..))).)))))))......-.--...... ( -31.20) >DroWil_CAF1 3125 114 - 1 UGAAGGGCCAAAGCAUUAUGGAUGCCCUGUUGGGUAUGUUUACGACAAAGGUAAAUGCCGACGAGCUUAAGAAGGAGAACUCAUCGAGCAGUCUUGCCAGUGCUCUCCCAGCUA ....(((....((((((....((((((....))))))............(((((.((((((.((((((......)))..))).))).)))...)))))))))))..)))..... ( -34.10) >DroYak_CAF1 3461 111 - 1 UAAAAGGCCAGAGUAUAAUGGAUGCCUUGCUUGGCAUGUUUACGACCAAAGUGAAUGCGGACGAGAUGAAAAAGGACAACUCUUCGGAUAGUUUGGCGAGUGGC-U--CGGCAA ......(((.((((.......(((((......))))).....((.(((((.(..((.((((.(((.((........)).))))))).))).)))))))....))-)--)))).. ( -31.10) >DroAna_CAF1 22191 111 - 1 UGAAAGGACAGAGCAUCAUGGACGCCCUUUUGGGCAUGUUUACCACCAAGGUUAAUGCUGAUGAAAUGAAGAAGGACACCUCUUCAGGCAGUUUGGCCAGCGCU-A--CUGCCA .....((.((((((....(((..((((....)))).((.....))))).((((((.((((......((((((.((...))))))))..))))))))))...)))-.--))))). ( -36.30) >DroPer_CAF1 4142 111 - 1 UAAAGGGUCAGAGCAUCAUGGACGCCUUGCUGGGCAUGUUCACCACUAAAGUGAACGCCGACGAGGUGAAAAAGGACACUUCGUCAGGCAGUUUGGCGAAUAAA-G--CGGCCA .....((((.(.....).....((((..(((((((..((((((.......)))))))))(((((((((........)))))))))...))))..))))......-.--.)))). ( -43.20) >consensus UAAAAGGCCAGAGCAUAAUGGAUGCCCUGCUGGGCAUGUUUACAACCAAAGUGAAUGCCGACGAGAUGAAGAAGGACAACUCGUCGGACAGUUUGGCCAGUGGU_U__CGGCAA .....(((((((((.......(((((......)))))((((((.......)))))))).((.(((.((........)).))).))......)))))))................ (-19.22 = -19.58 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:19 2006