Locus 3365

Sequence ID 3L_DroMel_CAF1
Location 9,831,019 – 9,831,139
Length 120
Max. P 0.678445
window5258

overview

Window 8

Location 9,831,019 – 9,831,139
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 87.57
Mean single sequence MFE -21.12
Consensus MFE -19.74
Energy contribution -20.30
Covariance contribution 0.56
Combinations/Pair 1.04
Mean z-score -1.38
Structure conservation index 0.93
SVM decision value 0.30
SVM RNA-class probability 0.678445
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9831019 120 - 23771897
AUGUGUAAACUUCACAUUAACAUGAGGUGGAUAAGAAAAACUAAACGUUUUAAGAAACUUGUUCACGACGCAAAUAGUAAACGAAGUUUACGAACCCAUAUUGACGUCAAGAUCGAGUUA
(((((.......)))))((((.(((.(((((((((.(((((.....)))))......)))))))))(((((((...((((((...))))))(....)...))).))))....))).)))) ( -24.20)
>DroSec_CAF1 124985 108 - 1
AUGUGUAAACUUCACAUUAACAUGAGGUGGAUAAGAAAAACUAAACGUUUUAAGAAACUUGUUCACGACGCAAAUAGUAAACGAAGUUUACGAACCCAUAUUG------------AGUUA
...((((((((((.(((....)))..(((((((((.(((((.....)))))......)))))))))................))))))))))...........------------..... ( -21.00)
>DroSim_CAF1 128301 108 - 1
AUGUGUAAACUUCACAUUAACAUGAGGUGGAUAAGAAAAACUAAACGUUUUAAGAAACUUGUUCACGACGCAAAUAGUAAACGAAGUUUACGAACCCAUAUUG------------AGUUA
...((((((((((.(((....)))..(((((((((.(((((.....)))))......)))))))))................))))))))))...........------------..... ( -21.00)
>DroYak_CAF1 138248 119 - 1
AUGUGUAAACUUCACAUUAACAUGAGGUGGAUAAGAAAAACUAAAUGUUUA-AAUACGUUGUCCACGACGAAAAUAGUAAGCGAAGUUAACGAACCCAUAUUGACAUCAAAAGCAAUUUA
.(((((.((((((.(...(((((..(((...........)))..)))))..-....(((((....)))))..........).)))))).)).........(((....)))..)))..... ( -18.30)
>consensus
AUGUGUAAACUUCACAUUAACAUGAGGUGGAUAAGAAAAACUAAACGUUUUAAGAAACUUGUUCACGACGCAAAUAGUAAACGAAGUUUACGAACCCAUAUUG____________AGUUA
...((((((((((.(((....)))..(((((((((.(((((.....)))))......)))))))))................))))))))))............................ (-19.74 = -20.30 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:18 2006