Locus 3363

Sequence ID 3L_DroMel_CAF1
Location 9,829,117 – 9,829,232
Length 115
Max. P 0.985584
window5255

overview

Window 5

Location 9,829,117 – 9,829,232
Length 115
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 90.76
Mean single sequence MFE -38.48
Consensus MFE -32.88
Energy contribution -34.75
Covariance contribution 1.88
Combinations/Pair 1.03
Mean z-score -2.78
Structure conservation index 0.85
SVM decision value 2.01
SVM RNA-class probability 0.985584
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9829117 115 + 23771897
AUUCGGUUGCUUGAA---UCAGAAUCGCA-AAAACUUGGUUCUCCGAGUUUAUUUGCUUUGCGGGUUUACACGCAUCCGCG-AACAACCUUUCGAAGCGGAAUCAGAACUAGAGUGACCG
...((((..(((...---((.((......-.((((((((....)))))))).(((((((((.(((((....(((....)))-...)))))..))))))))).)).))....)))..)))) ( -37.20)
>DroSec_CAF1 123083 117 + 1
-UUCGGUUGCUUGACUGUUCCGAAUCGCAUAAAACUUGGUUCU-CGAGUUUAUUUGCUUUGCGGGUUUACACGCAUCCGCA-AACAACCUUUCGAAGCGGAAUCAGAACUAGAGUGACCG
-..((((..(((..((((((((..(((((..(((((((.....-)))))))...)))(((((((((........)))))))-)).........))..))))).))).....)))..)))) ( -41.60)
>DroSim_CAF1 126373 118 + 1
-UUCGGUUGCUUGACUGUUCCGAAUCGCAUAAAACUUGGUUCUCCGAGUUUAUUUGCUUUGCGGGUUCACACGCAUCCGCG-AACAACCUUUCGAAGCGGAAUCAGAACUAGAGUGACCG
-..((((..(((..((((((((..(((((..((((((((....))))))))...)))(((((((((.(....).)))))))-)).........))..))))).))).....)))..)))) ( -45.20)
>DroYak_CAF1 136223 119 + 1
-UUCGGUUGCUUGACUGUUUUCACUCGCAAAAACCUUAUUUCUUCGAGUUUAUAUGCUUAGCGGGUUUACACGCAUCCGCGAAACAACCUUUCGAAGCGGAAUCAAAACUAGAGUGACCG
-..((((..(((....(((((.(((((..(((......)))...))))).....(((((.((((((........))))))((((.....)))).))))).....)))))..)))..)))) ( -29.90)
>consensus
_UUCGGUUGCUUGACUGUUCCGAAUCGCAUAAAACUUGGUUCUCCGAGUUUAUUUGCUUUGCGGGUUUACACGCAUCCGCG_AACAACCUUUCGAAGCGGAAUCAGAACUAGAGUGACCG
...((((..(((....((((.((.((.....((((((((....))))))))...(((((((.(((((....(((....)))....)))))..))))))))).)).))))..)))..)))) (-32.88 = -34.75 +   1.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:15 2006