Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 9,828,110 – 9,828,203 |
Length | 93 |
Max. P | 0.956881 |
Location | 9,828,110 – 9,828,203 |
---|---|
Length | 93 |
Sequences | 4 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 96.63 |
Mean single sequence MFE | -19.40 |
Consensus MFE | -17.38 |
Energy contribution | -18.12 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.00 |
Mean z-score | -1.90 |
Structure conservation index | 0.90 |
SVM decision value | 0.50 |
SVM RNA-class probability | 0.760447 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9828110 93 + 23771897 AAGCGAAUGCCGUAACAUUCAGCCUGGUCAUCCAUUACUUCUCAAACGGCAGCAACAACAAAUGUAUUGCACUGCUGCUGCACGAAAAA-AAAA ..(((((((......))))).)).(((....)))............((((((((.((.(((.....)))...)).)))))).)).....-.... ( -18.60) >DroSec_CAF1 122072 94 + 1 AAGCGAAUGCCGUAACAUUCAGCCUGGUCAUCCAUUACUUCUCAAACGGCAGCAACAAUAAAUGUAUUGCACUGCUGCUGCACGAAAAAAAAAA ..(((((((......))))).)).(((....)))............((((((((.(((((....)))))...)))))))).............. ( -20.90) >DroSim_CAF1 125361 94 + 1 AAGCGAAUGCCGUAACAUUCAGCCUUGUCAUCCAUUACUUCUCAAACGGCAGCAACAAUAAAUGUAUUGCACUGCUGCUGCACGAAAAAAAAAA ..(((((((......))))).)).......................((((((((.(((((....)))))...)))))))).............. ( -19.40) >DroYak_CAF1 135211 94 + 1 AAGCGAAUGCCGUAACAUUCAGCCUGGUCAUCCAUUACUUCUCCAACGGCAGCAACAACAAAUGCAUUGCACUGCUGCUGCACGAAAAAAAAAU ..(((((((......))))).)).(((....)))............((((((((.((.....(((...))).)).)))))).)).......... ( -18.70) >consensus AAGCGAAUGCCGUAACAUUCAGCCUGGUCAUCCAUUACUUCUCAAACGGCAGCAACAACAAAUGUAUUGCACUGCUGCUGCACGAAAAAAAAAA ..(((((((......))))).)).......................((((((((.(((((....)))))...)))))))).............. (-17.38 = -18.12 + 0.75)
Location | 9,828,110 – 9,828,203 |
---|---|
Length | 93 |
Sequences | 4 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 96.63 |
Mean single sequence MFE | -30.80 |
Consensus MFE | -27.66 |
Energy contribution | -27.48 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.06 |
Mean z-score | -3.02 |
Structure conservation index | 0.90 |
SVM decision value | 1.47 |
SVM RNA-class probability | 0.956881 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9828110 93 - 23771897 UUUU-UUUUUCGUGCAGCAGCAGUGCAAUACAUUUGUUGUUGCUGCCGUUUGAGAAGUAAUGGAUGACCAGGCUGAAUGUUACGGCAUUCGCUU ((((-((...((.(((((((((..((((.....)))))))))))))))...))))))...(((....)))(((.((((((....))))))))). ( -30.40) >DroSec_CAF1 122072 94 - 1 UUUUUUUUUUCGUGCAGCAGCAGUGCAAUACAUUUAUUGUUGCUGCCGUUUGAGAAGUAAUGGAUGACCAGGCUGAAUGUUACGGCAUUCGCUU .((((((...((.((((((((((((.........))))))))))))))...))))))...(((....)))(((.((((((....))))))))). ( -30.20) >DroSim_CAF1 125361 94 - 1 UUUUUUUUUUCGUGCAGCAGCAGUGCAAUACAUUUAUUGUUGCUGCCGUUUGAGAAGUAAUGGAUGACAAGGCUGAAUGUUACGGCAUUCGCUU .((((((...((.((((((((((((.........))))))))))))))...))))))............((((.((((((....)))))))))) ( -29.20) >DroYak_CAF1 135211 94 - 1 AUUUUUUUUUCGUGCAGCAGCAGUGCAAUGCAUUUGUUGUUGCUGCCGUUGGAGAAGUAAUGGAUGACCAGGCUGAAUGUUACGGCAUUCGCUU ((((((((..((.(((((((((..((((.....)))))))))))))))..))))))))..(((....)))(((.((((((....))))))))). ( -33.40) >consensus UUUUUUUUUUCGUGCAGCAGCAGUGCAAUACAUUUAUUGUUGCUGCCGUUUGAGAAGUAAUGGAUGACCAGGCUGAAUGUUACGGCAUUCGCUU .....(((((((.((.((((((..((((((....)))))))))))).)).)))))))............((((.((((((....)))))))))) (-27.66 = -27.48 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:14 2006