Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 9,827,780 – 9,827,900 |
Length | 120 |
Max. P | 0.726409 |
Location | 9,827,780 – 9,827,900 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.11 |
Mean single sequence MFE | -27.50 |
Consensus MFE | -25.45 |
Energy contribution | -25.82 |
Covariance contribution | 0.37 |
Combinations/Pair | 1.06 |
Mean z-score | -1.68 |
Structure conservation index | 0.93 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.726409 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9827780 120 - 23771897 UUCGAAUUCGGUGUACUUUUCUCAAUACGAAGGUGUCUGUUUUAUGAAUGAUUAUCAAAAGCAACAAGCGAAAAGAGCAUCGAUUAAUGGCCUACUAUAUAUUGGCAAGAGGUCAAAUGA .......(((((((.((((((.(.((((....)))).((((((.(((.......)))))))))....).)))))).)))))))....((((((.(((.....)))....))))))..... ( -30.20) >DroSec_CAF1 121740 120 - 1 UUCGAAUUCGGUGUACUUUUCUCAAUACAAAGAUGUUUGUUUUAUGAAUGAUUAUCAAAAGCAACAAGCGAAAAGAGACCCGAUUAAUGGCCUACUAUAUAUUGGCAAAAGGUCAAAUGA .......((((.((.((((((..........((((.(..(((...)))..).))))....((.....))))))))..))))))....((((((.(((.....)))....))))))..... ( -22.90) >DroSim_CAF1 125027 120 - 1 UUCGAAUUCGGUGUACUUUUCUCAAUACAAAGGUGUCUGUUUUAUGAAUGAUUAUCAAAAGCAACAAGCGAAAAGAGCAUCGAUUAAUGGCCUACUAUAUAUUGGCAAAAGGUCAAAUGA .......(((((((.((((((.(.((((....)))).((((((.(((.......)))))))))....).)))))).)))))))....((((((.(((.....)))....))))))..... ( -26.40) >DroYak_CAF1 134869 120 - 1 UUCGAAUUCGGUGUACUUUUCUCAACACGAAGGUGUCCGUUUUAUGAAUGAUUAUCAAAAGCAACAAGCGAAAAGAGCAUCGAUUAAUGGCCUACUAUAUAUUGGCAAAAGGUCAAAUGA .......(((((((.((((((.(.((((....))))..(((((.(((.......)))))))).....).)))))).)))))))....((((((.(((.....)))....))))))..... ( -30.50) >consensus UUCGAAUUCGGUGUACUUUUCUCAAUACAAAGGUGUCUGUUUUAUGAAUGAUUAUCAAAAGCAACAAGCGAAAAGAGCAUCGAUUAAUGGCCUACUAUAUAUUGGCAAAAGGUCAAAUGA .......(((((((.((((((.(.((((....))))..(((((.(((.......)))))))).....).)))))).)))))))....((((((.(((.....)))....))))))..... (-25.45 = -25.82 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:12 2006