Locus 336

Sequence ID 3L_DroMel_CAF1
Location 964,658 – 964,761
Length 103
Max. P 0.651626
window502

overview

Window 2

Location 964,658 – 964,761
Length 103
Sequences 6
Columns 106
Reading direction forward
Mean pairwise identity 77.91
Mean single sequence MFE -37.33
Consensus MFE -24.55
Energy contribution -24.19
Covariance contribution -0.36
Combinations/Pair 1.26
Mean z-score -1.32
Structure conservation index 0.66
SVM decision value 0.25
SVM RNA-class probability 0.651626
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 964658 103 + 23771897
CUCGGUGGCGGUAUCCAUUUUCGCCAUCGGCGGCAUGCUGGGCGGUUUCAGCGGAGGCUGGAUGGCCAACCGCUUUGGCAGGUAAUUU---AAUUGUCUUAUAUCA
.((((((((((.........))))))))))..((.(((..((((((((((((....))))))......))))).)..))).)).....---............... ( -35.90)
>DroVir_CAF1 9048 96 + 1
CUCAGUAGCCGUCUCCAUAUUUGCCAUUGGCGGCAUGCUGGGUGGUUUCAGUGGUGGCUGGAUGGCCAAUCGCUUCGGCAGGUUUGUA----AACAAUCA------
(((((((((((((...............)))))).)))))))..(((((((.(((((((....)))).)))((....))....))).)----))).....------ ( -32.46)
>DroEre_CAF1 7124 102 + 1
CUCGGUGGCGGUGUCCAUUUUCGCCAUCGGCGGCAUGCUGGGCGGCUUCAGCGGCGGCUGGAUGGCCAACCGCUUUGGCAGGUAAUUU---AAUCGGCUCACACC-
...((((((((((((((...(((((...))))).....)))))(((((((((....)))))..)))).)))))...(((.(((.....---.))).)))..))))- ( -39.80)
>DroWil_CAF1 10297 99 + 1
UUCAGUUGCCGUAUCCAUAUUUGCCAUUGGUGGCAUGCUCGGCGGUUUCAGUGGCGGCUGGAUGGCCAAUCGAUUUGGCAGGUAAGUG---AAUACCCGU----AA
((((.(((((.((((((...((((((((((.(((.(((...)))))))))))))))).))))))(((((.....))))).))))).))---)).......----.. ( -37.50)
>DroMoj_CAF1 8839 101 + 1
CUCGGUGGCUGUCUCCAUAUUUGCCAUUGGCGGCAUGCUCGGUGGUUUCAGCGGUGGCUGGAUGGCCAACCGCUUUGGCAGGUUUGUA----GUCAGCCGAAAC-A
...(.((((((.((.((.((((((((..(((((..((((.((.....)))))).(((((....))))).))))).)))))))).)).)----).))))))...)-. ( -42.90)
>DroAna_CAF1 7724 106 + 1
CUCGGUGGCAGUCUCCAUAUUCGCCAUCGGUGGUAUGCUGGGCGGUUUCAGCGGCGGCUGGAUGGCCAACCGCUUUGGCAGGUUAGUUAUCUAUUAACUUACAUUU
.(((((((((((......))).))))))))..((((((..((((((((((((....))))))......))))).)..)))(((((((.....)))))))))).... ( -35.40)
>consensus
CUCGGUGGCCGUCUCCAUAUUCGCCAUCGGCGGCAUGCUGGGCGGUUUCAGCGGCGGCUGGAUGGCCAACCGCUUUGGCAGGUAAGUU___AAUCAACUUA_A__A
.((((((((.............))))))))..((.(((((((((((((((((....))))))......))))).)))))).))....................... (-24.55 = -24.19 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:32 2006