Locus 3356

Sequence ID 3L_DroMel_CAF1
Location 9,824,728 – 9,824,846
Length 118
Max. P 0.895709
window5239

overview

Window 9

Location 9,824,728 – 9,824,846
Length 118
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 96.12
Mean single sequence MFE -26.94
Consensus MFE -23.85
Energy contribution -23.61
Covariance contribution -0.24
Combinations/Pair 1.04
Mean z-score -1.52
Structure conservation index 0.89
SVM decision value 0.99
SVM RNA-class probability 0.895709
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9824728 118 + 23771897
ACAUUUCCGCUGUGGUGUUACCUUUUGAGAAACCACCACUAA--AACCACAAUAAACGACACUUGAAACGAGCCAGCGAAGCGCACAAAUUGUGGCUCAAAAUUAAUAACGCAGCUCGGC
........((((((.(((((..(((((((.............--..(((((((........((((...))))...(((...)))....)))))))))))))).))))).))))))..... ( -26.36)
>DroSec_CAF1 118782 118 + 1
ACAUUUCCGCUGUGGUGUUACCUUUUGAGAAACCACCACUAA--AACCACAAUAAACGACACUUGAAACGAGCCAACGAAGCGCACAAAUUGUGGCUCAAAAUUAAUAACGCAGCUCGGC
........((((((.(((((..(((((((.............--..(((((((...((..........)).(((......).))....)))))))))))))).))))).))))))..... ( -23.86)
>DroSim_CAF1 122008 118 + 1
ACAUUUCCGCUGUGGUGUUACCUUUUGAGAAACCACCACUAA--AACCACAAUAAACGACACUUGAAACGAGCCAGCGAAGCGCACAAAUUGUGGCUCAAAAUUAAUAACGCAGCUCGGC
........((((((.(((((..(((((((.............--..(((((((........((((...))))...(((...)))....)))))))))))))).))))).))))))..... ( -26.36)
>DroEre_CAF1 121590 117 + 1
ACAUUUCCGCUGUGGUGUUACCU-UUGAGGAACCACCACUGA--AACCACAAUAAACGACACUUGAAACGAGCCAGCGAAGCGCACAAUUUGUGGCUCAAAAUUAAUAACACAGCUAGGG
......(((((((((((((....-(((.((...((....)).--..)).))).....))))).......((((((.((((........))))))))))...........))))))..)). ( -29.80)
>DroYak_CAF1 131793 119 + 1
ACAUUUCCGCUGUGGUGUUACCU-UUGAGAAACCACCACUGAAAAACCACAAUAAACGACACUUGAAACGAGCCAGCGAAGCGCACAAAUUGUGGCUCAAAAUUAAUAACACAGCUCGGC
........((((((.(((((..(-(((((....((....)).....(((((((........((((...))))...(((...)))....)))))))))))))..))))).))))))..... ( -28.30)
>consensus
ACAUUUCCGCUGUGGUGUUACCUUUUGAGAAACCACCACUAA__AACCACAAUAAACGACACUUGAAACGAGCCAGCGAAGCGCACAAAUUGUGGCUCAAAAUUAAUAACGCAGCUCGGC
........(((((((((((.....(((.(..................).))).....))))).......((((((.(((..........)))))))))...........))))))..... (-23.85 = -23.61 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:00 2006