Locus 3354

Sequence ID 3L_DroMel_CAF1
Location 9,823,946 – 9,824,046
Length 100
Max. P 0.771465
window5233

overview

Window 3

Location 9,823,946 – 9,824,046
Length 100
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 89.86
Mean single sequence MFE -29.14
Consensus MFE -24.30
Energy contribution -24.22
Covariance contribution -0.08
Combinations/Pair 1.12
Mean z-score -1.53
Structure conservation index 0.83
SVM decision value 0.53
SVM RNA-class probability 0.771465
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9823946 100 - 23771897
CCAAUUUGGCCAUUUCGAAAUGGAAGUCGUGCGUUCGCGUCGCUCACAUUGAGUGAUGUG----AUUGAAGGUUAAUAGUGCCAAAAAGGUA----AAUU------------GGCAACAC
((((((((((((((((......)))))....((.(((((((((((.....))))))))))----).))..)))))....((((.....))))----))))------------))...... ( -30.80)
>DroSec_CAF1 117968 104 - 1
CCAAUUUGGCCAUUUCGAAAUGGAAGUCGUGCGUUCGCGUCGCUCACAUUGAGUGAUGUGUGCAAUUGAAGGUUAAUAGUGCCAAAAAGGUA----AAUU------------GGCAACAC
((((((((((((((((......)))))..((((..((((((((((.....))))))))))))))......)))))....((((.....))))----))))------------))...... ( -31.50)
>DroSim_CAF1 121209 104 - 1
CCAAUUUGGCCAUUUCGAAAUGGAAGUCGUGCGUUCGCGUCGUUUACAUUGAGUGAUGUGUGCAAUUGAAGGUUAAUAGUGCCAAAAAGGUA----AAUU------------GGCAACAC
((((((((.((..(((((.......(.((((....)))).)((.((((((....)))))).))..)))))(((.......))).....))))----))))------------))...... ( -24.40)
>DroEre_CAF1 120767 120 - 1
CCAAUUUGGCCAUUUUGAAAUGGAAGUCGUGCGUUCGCGUCGCUCACAUUGAGUGAUGUGUGCAAUCGAAGGUUAAUAGUGCCAAAAAAAAAAAAAAAUUACGAACAUUUACUGCAACAC
........((.......(((((....(((((.((.((((((((((.....)))))))))).)).......(((.......)))................))))).)))))...))..... ( -27.50)
>DroYak_CAF1 130980 104 - 1
CCAAUUUGGCCAUUUCGAAAUGGAAGUCGUGCGUUCGCGUCGCUCACAUUGAGUGAUGUGUGCAAUUGAAGGUUAAUAGUGCCAAAAAGGUA----AAUU------------GGCAACAC
((((((((((((((((......)))))..((((..((((((((((.....))))))))))))))......)))))....((((.....))))----))))------------))...... ( -31.50)
>consensus
CCAAUUUGGCCAUUUCGAAAUGGAAGUCGUGCGUUCGCGUCGCUCACAUUGAGUGAUGUGUGCAAUUGAAGGUUAAUAGUGCCAAAAAGGUA____AAUU____________GGCAACAC
(((.(((((.....))))).)))......(((((.((((((((((.....)))))))))).)).......(((.......)))..............................))).... (-24.30 = -24.22 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:54 2006