Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 9,823,649 – 9,823,769 |
Length | 120 |
Max. P | 0.680458 |
Location | 9,823,649 – 9,823,769 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.36 |
Mean single sequence MFE | -30.26 |
Consensus MFE | -23.30 |
Energy contribution | -23.30 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.72 |
Structure conservation index | 0.77 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.680458 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9823649 120 + 23771897 UUUCCGGUCUGAUUACGCUCAUGAUCUCAUGAUCAUCUCACGAUCUCCUCCUGUUGUGGCCAACUUUGUUUGGCUUCGGCCAGAAAUUCUGGACAUGUCUUAUUGGCUGGGCUGGCUUUU ...(((((((..........((((((....))))))..((((((........))))))(((((.....((((((....))))))......(((....)))..))))).)))))))..... ( -35.60) >DroSec_CAF1 117687 120 + 1 UUUCCGGUCUGAUUACGCUCAUGAUCUCAUGAUCAUCUCACGAUCUCCUCCUGUUGUGGCCAACUUUGUUUGGCUUCGGCCUGAAAUUCUGGACAUGUCUUAUUGGCUGCGCUGGCUUUU ...(((((..((((......((((((....)))))).....))))..........(..(((((........(((....))).........(((....)))..)))))..))))))..... ( -30.90) >DroSim_CAF1 120934 120 + 1 UUUCCGGUCUGAUUACGCUCAUGAUCUCAUGAUCAUCUCACGAUCUCCUCCUGUUGUGGCCAACUUUGUUUGGCUUCGGCCUGAAAUUCUGGACAUGUCUUAUUGGCUGCGCUGGCUUUU ...(((((..((((......((((((....)))))).....))))..........(..(((((........(((....))).........(((....)))..)))))..))))))..... ( -30.90) >DroEre_CAF1 120477 111 + 1 UUUCCGGUCUGAUUACGCUCAUGAUCUCAUGAUCAUCUCACGAUCUCCUCCUGUUGUGGCCAACUUUGUUUGGCUUCGGCCUGAAAUUUUGUGCAAGUCUUAUAG---------GCUUUU ((((.((.((((........((((((....))))))..((((((........))))))(((((......))))).)))))).))))........(((((.....)---------)))).. ( -26.30) >DroYak_CAF1 130694 111 + 1 UUUCCGGUCUGAUUACGCUCAUGAUCUCAUGAUCAUCUCACGAUCUCCUCCUGUUGUGGCCAACUUUGUUUGGCUUCGGCCAGAAAUUUUGUUCAUGUCUUAUAG---------GCUUUU .....(((((((....(.(((((....))))).)...))).))))....(((((.(((..(((.....((((((....))))))....)))..))).....))))---------)..... ( -27.60) >consensus UUUCCGGUCUGAUUACGCUCAUGAUCUCAUGAUCAUCUCACGAUCUCCUCCUGUUGUGGCCAACUUUGUUUGGCUUCGGCCUGAAAUUCUGGACAUGUCUUAUUGGCUG_GCUGGCUUUU ((((.((.((((........((((((....))))))..((((((........))))))(((((......))))).)))))).)))).................................. (-23.30 = -23.30 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:53 2006