| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 9,822,343 – 9,822,461 |
| Length | 118 |
| Max. P | 0.680274 |
| Location | 9,822,343 – 9,822,461 |
|---|---|
| Length | 118 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.71 |
| Mean single sequence MFE | -30.79 |
| Consensus MFE | -20.83 |
| Energy contribution | -20.43 |
| Covariance contribution | -0.40 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.680274 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9822343 118 - 23771897 ACAUGCCGCAUGUUUAUCAUGAUGU-UUGCCUAGGGAUCUUUAUAUACAUAUAUAUAUAUAUCCAGUGGAUUCCA-GCGAUCUGCUUAAUUGGGCAGGUCACCCUUAUUGGCCUCUGGGU .((.((..((((.....))))..))-.))(((((((((...((((((....))))))...)))).((.(((....-(.(((((((((....))))))))).)....))).))..))))). ( -31.30) >DroSec_CAF1 116388 109 - 1 ACAUGCGGCAUGUUUAUCAAAAUGGUUGGCUUAGGGAUCUUUAUAUAUAUAU---------CCCAGUGGAUCUCAGGCGAUCUGGGUAAUUGAUCAGGUCACCCGCAUUGGU--CUGGGC .(((((((....................((((.(((((((............---------......)))))))))))(((((((........)))))))..))))).))..--...... ( -28.17) >DroSim_CAF1 119639 105 - 1 ACAUGCCGCAUGUUUAUCAAAAUGU-UUGCUUAGGGAUCUUUAUAUAUAUAU---------CCCAGUGGAUCCCA-GCGAUCUGGUUAAUUGAUCAGGUCACCCGCAUUGGU--CUGG-- .((.((((.((((............-..(((..(((((((............---------......))))))))-))(((((((((....)))))))))....))))))))--.)).-- ( -30.67) >DroEre_CAF1 119196 99 - 1 ACAUGCCGCAUGUUUAUCAUGCUGU-UGGCUUAGGGAUCUUUAUAUAU-----------------GUGGAUCCCA-GCGAUUUGGUUAAUUGAUCAGGUCACUCGCUUUGCG--CCGGGU ....((((((((.....)))))...-((((...(((((((........-----------------..)))))))(-(.(((((((((....))))))))).))........)--)))))) ( -33.50) >DroYak_CAF1 129352 99 - 1 ACAUGCCGCAUGUUUAUCAUGAUGU-UUGCUUAGGGAUCGUUAUAUAU-----------------GUGGAUCCCA-GAGAUCUGGUUAAUUGAUCAGGUCACCCGCAUUUAG--CUGGGU .((.((..((((.....))))..))-.))....((((((.........-----------------...)))))).-..(((((((((....)))))))))((((((.....)--).)))) ( -30.30) >consensus ACAUGCCGCAUGUUUAUCAUGAUGU_UUGCUUAGGGAUCUUUAUAUAUAUAU__________CCAGUGGAUCCCA_GCGAUCUGGUUAAUUGAUCAGGUCACCCGCAUUGGG__CUGGGU (((((...)))))....................(((((((...........................)))))))....(((((((((....))))))))).((((..........)))). (-20.83 = -20.43 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:47 2006