Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 9,821,272 – 9,821,432 |
Length | 160 |
Max. P | 0.975900 |
Location | 9,821,272 – 9,821,362 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 76.72 |
Mean single sequence MFE | -16.80 |
Consensus MFE | -11.94 |
Energy contribution | -11.31 |
Covariance contribution | -0.63 |
Combinations/Pair | 1.19 |
Mean z-score | -2.09 |
Structure conservation index | 0.71 |
SVM decision value | 1.76 |
SVM RNA-class probability | 0.975900 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9821272 90 + 23771897 ----------AAAAAAAAAACAGUAAACUUCAUUCAUAAAAUAAUAGUGGUAGUAA--AUCUAUGGUAGAAAGA--GGAAGUUGAACG-GGGGAAACCCGGCCAG--------------- ----------............((.((((((.(((......((...((((......--..))))..))....))--)))))))..)).-(((....)))......--------------- ( -16.60) >DroSec_CAF1 115242 96 + 1 AGCAAAGCAAA-----AAAACAGUAAAUUUCAUUCAUAAAAUAAUAGUGGUAGUAA--AUCUAUGAUAGAAAGG-GGGAAGUCGAAUG-GGGGAAACCCGGCAAG--------------- ......((...-----..............(((((...........((.((((...--..)))).)).....((-......)))))))-(((....))).))...--------------- ( -17.10) >DroSim_CAF1 118561 102 + 1 AGCAAAGCAAAAAAAAAAAACAGUAAAUUUCAUUCAUAAAAUAAUAGUGGUAGUAA--AUCUAUGAUAGAAAGGGGGGAAGUCGAAUG-GGGGAAACCCGGCAAG--------------- ......((......................(((((...........((.((((...--..)))).))..........(....))))))-(((....))).))...--------------- ( -17.00) >DroYak_CAF1 128253 109 + 1 -G--------AAAAGCAAAACAGUAAAUUUCAUUCAUAAAAUAAUAGUGGUAGUAUAUAUCUGUGGUAGAAAGA--GGAAGUCAAACGCGGGGAAACCCGGCAAAAUACAAAACAAAAGA -.--------....((......((..(((((.(((........((((..(((.....)))))))........))--))))))...)).((((....)))))).................. ( -16.49) >consensus _G________AAAAAAAAAACAGUAAAUUUCAUUCAUAAAAUAAUAGUGGUAGUAA__AUCUAUGAUAGAAAGA__GGAAGUCGAACG_GGGGAAACCCGGCAAG_______________ ......................((..(((((..((........((((.............))))........))...))))).......(((....))).)).................. (-11.94 = -11.31 + -0.63)
Location | 9,821,338 – 9,821,432 |
---|---|
Length | 94 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.99 |
Mean single sequence MFE | -24.50 |
Consensus MFE | -15.86 |
Energy contribution | -15.30 |
Covariance contribution | -0.56 |
Combinations/Pair | 1.14 |
Mean z-score | -2.00 |
Structure conservation index | 0.65 |
SVM decision value | 0.68 |
SVM RNA-class probability | 0.821995 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9821338 94 + 23771897 GUUGAACG-GGGGAAACCCGGCCAG---------------------AAA-AAAGUGUUGAAAUUUUUG-GUUUCUGUGACGUAUAUAAUUUAUUUAUGCGUGUUUU--UUUAUGGCUUUG ........-(((....)))(((((.---------------------(((-((((....(((((.....-)))))....(((((((.........))))))).))))--))).)))))... ( -25.60) >DroSec_CAF1 115314 97 + 1 GUCGAAUG-GGGGAAACCCGGCAAG---------------------AAAAAAAGUGUUGAAAUAUUUGCGUUUCUGUGACGUUUAUAAUUUAUUUAUGCGUGUUUU-UUGUAUGGCUUUG ((((....-(((....))).(((((---------------------(((....((((((((.(((..(((((.....)))))..))).))))...))))...))))-)))).)))).... ( -25.10) >DroSim_CAF1 118639 97 + 1 GUCGAAUG-GGGGAAACCCGGCAAG---------------------AAA-AAAGUGUUGAAAUAUUUGCGUUUCUGUGACGUUUAUAAUUUAUUUAUGCGUGUUUUUUUUUAUGGCUUUG ((((....-(((....)))...(((---------------------(((-((.((((((((.(((..(((((.....)))))..))).))))...))))...))))))))..)))).... ( -21.60) >DroYak_CAF1 128322 115 + 1 GUCAAACGCGGGGAAACCCGGCAAAAUACAAAACAAAAGACAAAAAAAA-AAUGUGUUGAAAUUUUUGCGUUUCUGUGACGUUUAUAAUUUAUUUAUGUGUGUUU---UUUAUGACUU-U ((((...(((((....))).))............((((((((.......-.(((((...(((((...(((((.....)))))....)))))...))))).)))))---))).))))..-. ( -25.70) >consensus GUCGAACG_GGGGAAACCCGGCAAG_____________________AAA_AAAGUGUUGAAAUAUUUGCGUUUCUGUGACGUUUAUAAUUUAUUUAUGCGUGUUUU__UUUAUGGCUUUG ((((.....(((....))).......................................(((((......)))))...((((..(((((.....)))))..))))........)))).... (-15.86 = -15.30 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:46 2006